Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3329681 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3329681, End: 3330964, Length: 1284

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006138:432000:4325504325504338331284Desulfotalea psychrophila LSv54, complete genomehypothetical protein2e-67256
NC_008782:3167440:3196206319620631974261221Acidovorax sp. JS42, complete genomeSMC domain protein1e-48194
NC_011566:4709672:4712298471229847135991302Shewanella piezotolerans WP3, complete genomeATPase2e-40167
NC_008752:3684739:3712155371215537134681314Acidovorax avenae subsp. citrulli AAC00-1, complete genomeSMC domain protein2e-39163
NC_013194:3861409:3880836388083638823051470Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeSMC domain protein4e-37155
NC_002505:2537655:2550614255061425522361623Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completehypothetical protein3e-32139
NC_012668:1036000:1042430104243010440521623Vibrio cholerae MJ-1236 chromosome 1, complete sequenceATP binding protein3e-32139
NC_016445:2012294:2020771202077120223931623Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completehypothetical protein3e-32139
NC_016944:2588435:2596912259691225985341623Vibrio cholerae IEC224 chromosome I, complete sequencehypothetical protein3e-32139
NC_014837:33014:4381943819454621644Pantoea sp. At-9b chromosome, complete genomeSMC domain-containing protein6e-31135
NC_008570:2216736:2243181224318122448511671Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeRecF/RecN/SMC family protein3e-30132
NC_015663:1356982:1367997136799713696401644Enterobacter aerogenes KCTC 2190 chromosome, complete genomeSMC domain-containing protein7e-29128
NC_010556:316996:3392073392073405201314Exiguobacterium sibiricum 255-15, complete genomeAAA ATPase2e-28127
NC_007404:2743877:2759441275944127608771437Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein3e-27123
NC_006513:3486558:3507571350757135088691299Azoarcus sp. EbN1, complete genomehypothetical ATP-binding protein1e-26121
NC_008576:4701930:3859385952231365Magnetococcus sp. MC-1, complete genomeATP binding protein3e-26120
NC_015711:3122000:3126744312674431279821239Myxococcus fulvus HW-1 chromosome, complete genomeSMC domain-containing protein6e-26119
NC_015381:1623587:1650399165039916517961398Burkholderia gladioli BSR3 chromosome 1, complete sequenceATP-binding protein3e-25116
NC_016863:3905875:3911308391130839124981191Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1ATP-binding protein2e-24114
NC_016860:3964000:3972905397290539740951191Salmonella enterica subsp. enterica serovar Typhimurium strATP-binding protein2e-24114
NC_003047:536151:5553595553595566901332Sinorhizobium meliloti 1021, complete genomehypothetical protein4e-24112
NC_009457:2095366:210485621048562105467612Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein5e-22105
NC_015675:5607297:5614345561434556156731329Mesorhizobium opportunistum WSM2075 chromosome, complete genomeATP-binding protein involved in virulence1e-20101
NC_016609:6750111:6761634676163467629591326Niastella koreensis GR20-10 chromosome, complete genomeATPase2e-20100
NC_014616:169311:1903041903041917101407Bifidobacterium bifidum S17 chromosome, complete genomeRecF/RecN/SMC N terminal domain3e-1996.7
NC_017068:2055500:2063556206355620648331278Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative ATP binding protein2e-1894
NC_015675:5607297:5623994562399456253641371Mesorhizobium opportunistum WSM2075 chromosome, complete genomeAAA ATPase3e-1583.2
NC_003888:3602753:3610876361087636121711296Streptomyces coelicolor A3(2), complete genomeATP-binding protein3e-1479.7
NC_007333:430000:4427574427574438391083Thermobifida fusca YX, complete genomeATPase4e-1479.7
NC_013131:6329438:6349938634993863513321395Catenulispora acidiphila DSM 44928, complete genomeAAA ATPase2e-1377.4
NC_015501:1200411:1218974121897412202331260Porphyromonas asaccharolytica DSM 20707 chromosome, completehypothetical protein3e-1377
NC_003910:486776:4970194970194986171599Colwellia psychrerythraea 34H, complete genomehypothetical protein3e-1170.1
NC_013037:1072266:1082487108248710842201734Dyadobacter fermentans DSM 18053, complete genomeSMC domain protein1e-1068.2
NC_018691:1322389:1327320132732013286181299Alcanivorax dieselolei B5 chromosome, complete genomeATP-dependent endonuclease of the OLD family-like protein1e-0964.7
NC_016818:2836851:2861697286169728631931497Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein6e-0962.4
NC_003919:4618988:4642098464209846434351338Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein3e-0860.5
NC_007614:109000:1266151266151279041290Nitrosospira multiformis ATCC 25196 chromosome 1, completeATP-dependent endonuclease of the OLD family-like3e-0860.5
NC_010334:1561691:1584532158453215857791248Shewanella halifaxensis HAW-EB4, complete genomeATP-dependent endonuclease of the OLD family-like protein3e-0860.1
NC_009663:2363841:2368198236819823700991902Sulfurovum sp. NBC37-1, complete genomehypothetical protein3e-0860.1
NC_016603:3475843:349137534913753491980606Acinetobacter calcoaceticus PHEA-2 chromosome, complete genomehypothetical protein1e-0758.5
NC_009778:567000:5992425992426006121371Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-0756.6
NC_017030:6558624:6568957656895765702521296Corallococcus coralloides DSM 2259 chromosome, complete genomeATPase3e-0756.6
NC_016812:4246542:4265353426535342671821830Sinorhizobium fredii HH103, complete genomehypothetical protein7e-0755.5
NC_011601:1269500:1279122127912212804951374Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeATP-binding protein9e-0755.1
NC_013446:2961647:2980542298054229823591818Comamonas testosteroni CNB-2, complete genomehypothetical protein2e-0654.3
NC_020541:2551539:2563713256371325651971485Rhodanobacter sp. 2APBS1, complete genomehypothetical protein4e-0653.1
NC_014394:3114648:3121149312114931230381890Gallionella capsiferriformans ES-2 chromosome, complete genomehypothetical protein4e-0653.1