Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3332277 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3332277, End: 3333482, Length: 1206

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009615:4642500:4667846466784646690541209Parabacteroides distasonis ATCC 8503 chromosome, complete genomecapsular polysaccharide biosynthesis protein Cps4K0661
NC_014033:103020:1257981257981269941197Prevotella ruminicola 23 chromosome, complete genomehypothetical protein8e-180630
NC_009614:947775:9695659695659707191155Bacteroides vulgatus ATCC 8482 chromosome, complete genomeepimerase/dehydratase, involved in capsular polysaccharide biosynthesis1e-150532
NC_009253:3272000:3291453329145332925621110Desulfotomaculum reducens MI-1 chromosome, complete genomeNAD-dependent epimerase/dehydratase6e-127454
NC_015152:272500:2839582839582850671110Spirochaeta sp. Buddy chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-120432
NC_017095:119361:1193611193611204701110Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeWxcM-like protein,NAD dependent epimerase/dehydratase family protein7e-111400
NC_021171:4519495:4523662452366245247711110Bacillus sp. 1NLA3E, complete genomecapsular polysaccharide synthesis protein Cap5F3e-108392
NC_009483:1936486:1964174196417419653641191Geobacter uraniireducens Rf4 chromosome, complete genomeNAD-dependent epimerase/dehydratase5e-105381
NC_014220:170021:1767801767801778951116Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-94345
NC_011060:514874:5462265462265473441119Pelodictyon phaeoclathratiforme BU-1, complete genomeNAD-dependent epimerase/dehydratase1e-86320
NC_016745:2785346:2792885279288527940031119Oceanimonas sp. GK1 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-81302
NC_014640:6745873:6764312676431267654181107Achromobacter xylosoxidans A8 chromosome, complete genomeNAD dependent epimerase/dehydratase family protein 64e-81302
NC_013282:2827757:2838121283812128392241104Cronobacter turicensis, complete genomehypothetical protein1e-80300
NC_013361:2848949:2857935285793528590411107Escherichia coli O26:H11 str. 11368 chromosome, complete genomeUDP-2-acetamido-2,6-dideoxy-beta-L-talose 4-dehydrogenase2e-80299
NC_012660:1804610:1820398182039818215251128Pseudomonas fluorescens SBW25 chromosome, complete genomeNAD dependent epimerase/dehydratase8e-80297
NC_015732:529201:5693055693055704171113Spirochaeta caldaria DSM 7334 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-78293
NC_008782:3167440:3195058319505831962091152Acidovorax sp. JS42, complete genomeNAD-dependent epimerase/dehydratase7e-78291
NC_015379:1887275:1908865190886519099831119Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,NAD dependent epimerase/dehydratase6e-77288
NC_009656:1994392:2021096202109620222171122Pseudomonas aeruginosa PA7 chromosome, complete genomeprotein WbjC4e-77288
NC_010322:1520973:1536073153607315371911119Pseudomonas putida GB-1 chromosome, complete genomeNAD-dependent epimerase/dehydratase4e-77288
NC_005363:1604337:1630440163044016315401101Bdellovibrio bacteriovorus HD100, complete genomecapsular polysaccharide synthesis enzyme Cap5F3e-75282
NC_015424:3112637:3129941312994131310621122Aeromonas veronii B565 chromosome, complete genomeNAD dependent epimerase/dehydratase5e-75281
NC_008027:1559083:1576865157686515779801116Pseudomonas entomophila L48, complete genomenucleoside-diphosphate-sugar epimerase WbjC3e-74279
NC_006513:3486558:3502800350280035039271128Azoarcus sp. EbN1, complete genomeprobable NAD dependent epimerase/dehydratase, possibly involved in polysaccharide biosynthesis4e-74278
NC_011663:1709003:1728016172801617291191104Shewanella baltica OS223 chromosome, complete genomeNAD-dependent epimerase/dehydratase8e-74277
NC_014313:165490:1792761792761803611086Hyphomicrobium denitrificans ATCC 51888 chromosome, completeNAD-dependent epimerase/dehydratase8e-72271
NC_014958:3131191:3139989313998931410981110Deinococcus maricopensis DSM 21211 chromosome, complete genomeNAD-dependent epimerase/dehydratase1e-43177
NC_014151:813755:8292318292318303251095Cellulomonas flavigena DSM 20109 chromosome, complete genomeNAD-dependent epimerase/dehydratase5e-43175
NC_015145:2693749:2715978271597827170691092Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomedTDP-4-dehydrorhamnose 3,5-epimerase-like enzyme9e-42171
NC_010168:1373337:1379004137900413801131110Renibacterium salmoninarum ATCC 33209 chromosome, complete genomecapsular polysaccharide synthesis enzyme5e-40165
NC_007951:769500:770344770344771300957Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative epimerase/dehydratase8e-1065.5
NC_015416:1039144:104900910490091049896888Methanosaeta concilii GP-6 chromosome, complete genomeNAD dependent epimerase/dehydratase2e-0757
NC_010508:933862:952979952979953944966Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceNAD-dependent epimerase/dehydratase4e-0756.2
NC_013665:738883:754236754236755201966Methanocella paludicola SANAE, complete genomeputative nucleotide sugar epimerase/dehydratase2e-0654.3
NC_016593:3402205:3423723342372334247271005Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeNAD-dependent epimerase/dehydratase2e-0654.3
NC_014206:3468500:3474810347481034758141005Geobacillus sp. C56-T3 chromosome, complete genomeNAD-dependent epimerase/dehydratase2e-0653.5
NC_016642:2440070:245290724529072453884978Pseudovibrio sp. FO-BEG1 chromosome, complete genomeNAD-dependent epimerase/dehydratase8e-0652