Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3305045 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3305045, End: 3306286, Length: 1242

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014166:2959688:2970841297084129719501110Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein3e-27122
NC_015738:978794:9901309901309913351206Eggerthella sp. YY7918, complete genomebiotin carboxylase6e-27122
NC_013204:2826500:2847006284700628482141209Eggerthella lenta DSM 2243, complete genomeprotein of unknown function DUF2012e-25117
NC_010516:2877407:2885755288575528869001146Clostridium botulinum B1 str. Okra, complete genomeputative carbamoyl-phosphate synthase large chain3e-23109
NC_008740:2905990:2917898291789829190941197Marinobacter aquaeolei VT8, complete genomeputative carbamoyl-phosphate-synthetase7e-23108
NC_016633:1798758:1810586181058618117821197Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebiotin carboxylase2e-22107
NC_015500:900807:9104639104639116681206Treponema brennaborense DSM 12168 chromosome, complete genomeATP-grasp fold domain protein, DUF201-type3e-22106
NC_009052:3467000:3471137347113734723541218Shewanella baltica OS155, complete genomephosphoribosylglycinamide synthetase1e-20100
NC_016112:3103716:3135584313558431367771194Methylomicrobium alcaliphilum chromosome, complete genomehypothetical protein2e-1997.1
NC_013410:2519441:2544337254433725455601224Fibrobacter succinogenes subsp. succinogenes S85 chromosome,phosphoribosylglycinamide synthetase8e-1995.1
NC_015160:3556114:3562846356284635640511206Odoribacter splanchnicus DSM 20712 chromosome, complete genomeputative carbamoyl-phosphate-synthetase1e-1894.4
NC_020304:2677372:2698138269813826992921155Desulfocapsa sulfexigens DSM 10523, complete genomebiotin carboxylase1e-1791.3
NC_007517:480303:4953134953134965271215Geobacter metallireducens GS-15, complete genomeputative glycolate oxidase2e-1790.9
NC_020409:1407857:1417655141765514188781224Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein6e-1789
NC_013223:724394:7430347430347442661233Desulfohalobium retbaense DSM 5692, complete genomephosphoribosylglycinamide synthetase9e-1788.2
NC_013206:21288:2917129171304031233Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446phosphoribosylglycinamide synthetase2e-1584
NC_017243:1558000:1577367157736715795142148Brachyspira intermedia PWS/A chromosome, complete genomeL-lactate dehydrogenase3e-1480.1
NC_014206:2516000:2542163254216325433981236Geobacillus sp. C56-T3 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain-containing protein ATP-grasp2e-1377.4
NC_014915:1080793:1088971108897110902061236Geobacillus sp. Y412MC52 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp2e-1377.4
NC_013411:1941762:1949027194902719502621236Geobacillus sp. Y412MC61, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp2e-1377.4
NC_014150:3085013:3107308310730831094792172Brachyspira murdochii DSM 12563 chromosome, complete genomeATP-dependent carboxylate-amine ligase domain protein ATP-grasp4e-1376.3
NC_007645:3581114:3583320358332035845581239Hahella chejuensis KCTC 2396, complete genomeprobable carbamoylphosphate synthase2e-1273.9
NC_014976:759129:7710707710707723111242Bacillus subtilis BSn5 chromosome, complete genomephosphoribosylglycinamide synthetase2e-1273.9
NC_013722:2919560:2934132293413229354031272Xanthomonas albilineans, complete genomeputative carbamoyl-phosphate synthase, cpsase protein1e-1171.2
NC_011663:1627220:1644567164456716457961230Shewanella baltica OS223 chromosome, complete genomehypothetical protein6e-1168.9
NC_011831:2728932:2747266274726627485221257Chloroflexus aggregans DSM 9485, complete genomephosphoribosylglycinamide synthetase7e-1065.5
NC_008322:1595500:1606266160626616074531188Shewanella sp. MR-7, complete genomeprotein of unknown function DUF2011e-0965.1
NC_016584:5305417:5312738531273853140301293Desulfosporosinus orientis DSM 765 chromosome, complete genomebiotin carboxylase8e-1065.1
NC_015381:1318818:1341068134106813423061239Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein1e-0964.7
NC_014206:1202907:1211656121165612128791224Geobacillus sp. C56-T3 chromosome, complete genomehypothetical protein3e-0860.5
NC_020134:2295092:2298645229864522999041260Clostridium stercorarium subsp. stercorarium DSM 8532, completephosphoribosylamine--glycine ligase PurD7e-0858.9
NC_014500:4049384:4060026406002640612251200Dickeya dadantii 3937 chromosome, complete genomeargininosuccinate lyase6e-0858.9
NC_017219:538864:5622905622905635791290Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein2e-0757.4
NC_011593:533884:5624975624975637861290Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,dehydrogenase2e-0757.4
NC_014152:1:2929229292304761185Thermincola sp. JR, complete genomeprotein of unknown function DUF2016e-0755.8
NC_009832:4482500:4508690450869045099311242Serratia proteamaculans 568, complete genomeprotein of unknown function DUF2016e-0755.8
NC_010278:1235934:1247008124700812481891182Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,phosphoribosylglycinamide formyltransferase 22e-0654.3
NC_007168:1923723:1928606192860619298471242Staphylococcus haemolyticus JCSC1435, complete genomephosphoribosylamine--glycine ligase2e-0653.5
NC_016633:1798758:1812218181221818133481131Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebiotin carboxylase3e-0653.5
NC_010001:4250828:4269682426968242709531272Clostridium phytofermentans ISDg, complete genomephosphoribosylamine--glycine ligase4e-0653.1
NC_013440:8405719:8423293842329384244861194Haliangium ochraceum DSM 14365, complete genomeprotein of unknown function DUF2019e-0652