Pre_GI: BLASTP Hits

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Query: NC_013410:3280039:3319267 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Start: 3319267, End: 3320121, Length: 855

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009615:644757:671332671332672180849Parabacteroides distasonis ATCC 8503 chromosome, complete genomereductase4e-83308
NC_010003:1360472:137497613749761375788813Petrotoga mobilis SJ95, complete genomedTDP-4-dehydrorhamnose reductase1e-64246
NC_006347:2154906:217312421731242173987864Bacteroides fragilis YCH46, complete genomeputative reductase3e-56218
NC_014622:4517709:452229445222944523148855Paenibacillus polymyxa SC2 chromosome, complete genomenad dependent epimerase/dehydratase7e-56217
NC_015500:2112975:212246021224602123341882Treponema brennaborense DSM 12168 chromosome, complete genomeNAD-dependent epimerase/dehydratase3e-53208
NC_014624:2478985:248987424898742490734861Eubacterium limosum KIST612 chromosome, complete genomeputative reductase4e-47188
NC_007940:782207:788798788798789652855Rickettsia bellii RML369-C, complete genomedTDP-4-dehydrorhamnose reductase9e-42170
NC_011979:1590432:161003616100361610920885Geobacter sp. FRC-32, complete genomedTDP-4-dehydrorhamnose reductase2e-40166
NC_009883:871594:877185877185878039855Rickettsia bellii OSU 85-389, complete genomedTDP-4-dehydrorhamnose reductase8e-40164
NC_004129:5846415:586744958674495868306858Pseudomonas fluorescens Pf-5, complete genomehypothetical protein2e-38159
NC_009659:2523874:252955725295572530411855Janthinobacterium sp. Marseille chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-37156
NC_007958:830000:838135838135839007873Rhodopseudomonas palustris BisB5, complete genomedTDP-4-dehydrorhamnose reductase6e-36151
NC_014965:2954876:297051129705112971383873Vibrio vulnificus MO6-24/O chromosome I, complete sequencedTDP-4-dehydrorhamnose reductase3e-35149
NC_009439:2038303:206188820618882062745858Pseudomonas mendocina ymp, complete genomedTDP-4-dehydrorhamnose reductase6e-35147
NC_011979:2352961:236928123692812370126846Geobacter sp. FRC-32, complete genomedTDP-4-dehydrorhamnose reductase2e-34146
NC_009138:1138917:116449311644931165347855Herminiimonas arsenicoxydans, complete genomeputative dTDP-4-dehydrorhamnose reductase2e-33142
NC_002939:2454686:246209224620922463006915Geobacter sulfurreducens PCA, complete genomecarbohydrate oxidoreductase, putative6e-33141
NC_014394:3036758:304488330448833045737855Gallionella capsiferriformans ES-2 chromosome, complete genomedTDP-4-dehydrorhamnose reductase8e-33140
NC_010067:807129:818566818566819441876Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-32139
NC_014323:4792048:482512448251244825981858Herbaspirillum seropedicae SmR1 chromosome, complete genomedTDP-4-dehydrorhamnose reductase7e-31134
NC_010506:2046000:205878920587892059661873Shewanella woodyi ATCC 51908, complete genomedTDP-4-dehydrorhamnose reductase9e-30130
NC_016609:8271000:828823982882398289042804Niastella koreensis GR20-10 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-1686.7
NC_013202:1144192:115850411585041159394891Halomicrobium mukohataei DSM 12286, complete genomedTDP-4-dehydrorhamnose reductase5e-1271.6
NC_015557:1412917:143504214350421435869828Hydrogenobaculum sp. 3684 chromosome, complete genomedTDP-4-dehydrorhamnose reductase4e-1168.6
NC_019897:4131337:413535641353564136219864Thermobacillus composti KWC4 chromosome, complete genomedTDP-4-dehydrorhamnose reductase1e-1067.4
NC_014735:199434:204200204200205105906Halogeometricum borinquense DSM 11551 plasmid pHBOR01, completedTDP-4-dehydrorhamnose reductase5e-1065.5
NC_015320:470988:473243473243474112870Archaeoglobus veneficus SNP6 chromosome, complete genomedTDP-4-dehydrorhamnose reductase5e-1065.1
NC_011978:15059:288162881629667852Thermotoga neapolitana DSM 4359, complete genomePutative dTDP-4-dehydrorhamnose reductase1e-0964.3
NC_011985:3892630:391332739133273914214888Agrobacterium radiobacter K84 chromosome 1, complete genomedTDP-4-dehydrorhamnose reductase4e-0962
NC_008609:2254392:225529922552992256141843Pelobacter propionicus DSM 2379, complete genomedTDP-4-dehydrorhamnose reductase5e-0962
NC_016513:1958500:197536019753601976238879Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completedTDP-4-rhamnose reductase6e-0961.6
NC_017030:6061070:608696360869636087862900Corallococcus coralloides DSM 2259 chromosome, complete genomedTDP-4-dehydrorhamnose reductase8e-0961.2
NC_009092:1599526:161577416157741616640867Shewanella loihica PV-4, complete genomedTDP-4-dehydrorhamnose reductase1e-0860.8
NC_018876:2305659:232230323223032323088786Methanolobus psychrophilus R15 chromosome, complete genomedTDP-4-dehydrorhamnose reductase1e-0860.8
NC_016051:1429800:143903514390351439898864Thermococcus sp. AM4 chromosome, complete genomedTDP-4-dehydrorhamnose reductase1e-0860.5
NC_015152:389500:411727411727412626900Spirochaeta sp. Buddy chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-0860.1
NC_015931:618445:631165631165632052888Pyrolobus fumarii 1A, complete genomedTDP-4-dehydrorhamnose reductase2e-0860.1
NC_003901:1386000:138709613870961387905810Methanosarcina mazei Go1, complete genomedTDP-4-dehydrorhamnose reductase2e-0860.1
NC_014374:669356:669356669356670207852Acidilobus saccharovorans 345-15 chromosome, complete genomeDTDP-4-dehydrorhamnose reductase2e-0859.7
NC_003552:2674385:269175426917542692488735Methanosarcina acetivorans C2A, complete genome3e-0859.3
NC_007503:861668:865124865124865975852Carboxydothermus hydrogenoformans Z-2901, complete genomedTDP-4-dehydrorhamnose reductase3e-0859.3
NC_010483:273080:289168289168290019852Thermotoga sp. RQ2, complete genomedTDP-4-dehydrorhamnose reductase4e-0858.5
NC_014618:1752434:176268417626841763565882Enterobacter cloacae SCF1 chromosome, complete genomedTDP-4-dehydrorhamnose reductase5e-0858.5
NC_016641:834500:838912838912839787876Paenibacillus terrae HPL-003 chromosome, complete genomespore coat polysaccharide biosynthesis protein spsK7e-0858.2
NC_015577:3113907:315113731511373152012876Treponema azotonutricium ZAS-9 chromosome, complete genomedTDP-4-dehydrorhamnose reductase7e-0858.2
NC_014935:1389000:140795014079501408816867Nitratifractor saLSUginis DSM 16511 chromosome, complete genomedtdp-4-dehydrorhamnose reductase9e-0857.8
NC_004603:230000:237008237008237880873Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeputative dTDP-4-dehydrorhamnose reductase2e-0757
NC_009725:3602632:361431236143123615160849Bacillus amyloliquefaciens FZB42, complete genomeSpsK2e-0756.6
NC_013769:961072:968235968235969059825Sulfolobus islandicus L.D.8.5 chromosome, complete genomedTDP-4-dehydrorhamnose reductase2e-0756.6
NC_015955:581685:598290598290599180891Halophilic archaeon DL31 plasmid phalar01, complete sequencedTDP-4-dehydrorhamnose reductase3e-0755.8
NC_005966:69689:738587385874766909Acinetobacter sp. ADP1, complete genomedTDP-4-dehydrorhamnose reductase (dTDP-4-keto-L-rhamnose reductase) (dTDP-6-deoxy-L-mannose dehydrogenase) (dTDP-L-rhamnose synthetase)4e-0755.8
NC_015152:389500:418381418381419280900Spirochaeta sp. Buddy chromosome, complete genomedTDP-4-dehydrorhamnose reductase6e-0755.1
NC_010424:1778459:177948417794841780341858Candidatus Desulforudis audaxviator MP104C, complete genomedTDP-4-dehydrorhamnose reductase6e-0755.1
NC_009464:2523092:255059925505992551393795Uncultured methanogenic archaeon RC-I, complete genomedTDP-4-dehydrorhamnose reductase7e-0754.7
NC_013406:6494079:650231465023146503192879Paenibacillus sp. Y412MC10 chromosome, complete genomedTDP-4-dehydrorhamnose reductase1e-0654.3
NC_016816:1912366:194165119416511942499849Pantoea ananatis LMG 5342, complete genomedTDP-4-dehydrorhamnose reductase1e-0653.9
NC_015565:2736500:275306227530622753919858Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completedTDP-4-dehydrorhamnose reductase2e-0653.5
NC_017179:281069:296393296393297265873Clostridium difficile BI1, complete genomedtdp-4-dehydrorhamnose reductase2e-0652.8
NC_003552:4637764:466148246614824662291810Methanosarcina acetivorans C2A, complete genomedTDP-4-dehydrorhamnose reductase2e-0652.8
NC_007947:2140000:214877021487702149690921Methylobacillus flagellatus KT, complete genomedTDP-4-dehydrorhamnose reductase4e-0652
NC_015185:1352171:136669913666991367574876Desulfurobacterium thermolithotrophum DSM 11699 chromosome,dTDP-4-dehydrorhamnose reductase5e-0652
NC_020054:1666263:166785916678591668755897Fibrella aestuarina BUZ 2 drat genomedTDP-4-dehydrorhamnose reductase5e-0652