Pre_GI: BLASTP Hits

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Query: NC_017328:2090679:2098199 Shigella flexneri 2002017 chromosome, complete genome

Start: 2098199, End: 2098834, Length: 636

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012947:1769438:179312617931261793512387Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete1e-42172
NC_010473:2119480:212951521295152130150636Escherichia coli str. K-12 substr. DH10B, complete genomeconserved inner membrane protein2e-90331
AC_000091:2027648:204262020426202043255636Escherichia coli W3110 DNA, complete genomeconserved inner membrane protein2e-90331
CP002185:2181936:219189421918942192529636Escherichia coli W, complete genomeconserved inner membrane protein2e-89328
AP010958:2272919:227963422796342280269636Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted inner membrane protein2e-89328
NC_011992:717107:721681721681722340660Acidovorax ebreus TPSY, complete genomeFerric reductase domain protein transmembrane component2e-1995.9
NC_012968:1191037:119324111932411193906666Methylotenera mobilis JLW8, complete genomeFerric reductase domain protein transmembrane component domain7e-22103
CP002516:1902431:191332619133261913961636Escherichia coli KO11, complete genomeFerric reductase domain protein transmembrane component domain protein2e-89328
NC_008781:708811:709809709809710468660Polaromonas naphthalenivorans CJ2, complete genomeFerric reductase domain protein transmembrane component, N-terminal domain9e-1890.1
NC_008782:752686:755110755110755769660Acidovorax sp. JS42, complete genomeFerric reductase domain protein transmembrane component, N-terminal domain7e-1994
NC_008686:50750:573245732457950627Paracoccus denitrificans PD1222 chromosome 1, complete sequenceFerric reductase domain protein transmembrane component, N-terminal domain1e-21102
NC_009049:80184:866698666987274606Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequenceFerric reductase domain protein transmembrane component, N-terminal domain1e-1582.8
NC_016902:1902431:191332619133261913961636Escherichia coli KO11FL chromosome, complete genomeferric reductase domain-containing transmembrane protein2e-89328
NC_007802:4071006:408541340854134086015603Jannaschia sp. CCS1, complete genomeFerric reductase-like transmembrane component-like1e-1480.1
NC_008044:136844:143686143686144285600Silicibacter sp. TM1040, complete genomeFerric reductase-like transmembrane component-like1e-2099.8
NC_008228:2450700:245305624530562453703648Pseudoalteromonas atlantica T6c, complete genomeFerric reductase-like transmembrane component-like9e-35146
NC_008009:1264791:127203312720331272647615Acidobacteria bacterium Ellin345, complete genomeFerric reductase-like transmembrane subunit2e-1995.5
CU928160:2091249:210218921021892102824636Escherichia coli IAI1 chromosome, complete genomeheme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit2e-89328
NC_003911:3453764:346835934683593468955597Silicibacter pomeroyi DSS-3, complete genomehypothetical protein5e-1684.3
NC_017192:683493:686518686518687069552Arcobacter sp. L, complete genomehypothetical protein3e-1065.1
NC_013353:2272919:227963422796342280269636Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-89328
NC_009800:2049346:205958320595832060218636Escherichia coli HS, complete genomehypothetical protein2e-89328
NC_004741:2009769:201927420192742019909636Shigella flexneri 2a str. 2457T, complete genomehypothetical protein7e-87319
NC_008258:2045000:205126520512652051900636Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-85315
NC_012483:3529895:353090435309043531524621Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein2e-22105
NC_002696:2941644:296117629611762961937762Caulobacter crescentus CB15, complete genomehypothetical protein1e-1996.7
NC_007613:1038000:105206210520621052697636Shigella boydii Sb227, complete genomehypothetical protein3e-90331
NC_004431:2185750:219212121921212192756636Escherichia coli CFT073, complete genomehypothetical protein2e-86318
NC_013941:2425233:243480924348092435444636Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein2e-90331
NC_002655:2730659:274023627402362740871636Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-90331
NC_013364:2522888:253244225324422533077636Escherichia coli O111:H- str. 11128, complete genomehypothetical protein2e-89328
NC_004337:2035945:204260220426022043237636Shigella flexneri 2a str. 301, complete genomehypothetical protein7e-87319
NC_008209:695269:701807701807702412606Roseobacter denitrificans OCh 114, complete genomehypothetical protein4e-2098.2
NC_000913:2028472:203850720385072039142636Escherichia coli K12, complete genomehypothetical protein2e-90331
NC_002695:2655445:266502126650212665656636Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-90331
NC_009801:2159123:216994921699492170584636Escherichia coli E24377A, complete genomehypothetical protein2e-89328
NC_010498:1210145:121828112182811218916636Escherichia coli SMS-3-5, complete genomehypothetical protein5e-89326
NC_008253:1938975:194527619452761945911636Escherichia coli 536, complete genomehypothetical protein YedZ5e-87320
NC_020911:18500:215182151822135618Octadecabacter antarcticus 307, complete genomeputative ferric reductase-like transmembrane protein2e-1582.8
NC_020908:4263552:427707742770774277694618Octadecabacter arcticus 238, complete genomeputative ferric reductase-like transmembrane protein4e-1478.2
NC_009952:592000:616088616088616696609Dinoroseobacter shibae DFL 12, complete genomeputative sulfite oxidase subunit YedZ2e-21102
NC_012759:1920955:193099019309901931625636Escherichia coli BW2952 chromosome, complete genomeputative sulfite oxidase subunit YedZ2e-90331
NC_011415:2248417:225842222584222259057636Escherichia coli SE11 chromosome, complete genomeputative sulfite oxidase subunit YedZ2e-89328
NC_016822:2201388:221706922170692217704636Shigella sonnei 53G, complete genomeputative sulfite oxidase subunit YedZ1e-88325
NC_012967:1967675:197848219784821979117636Escherichia coli B str. REL606 chromosome, complete genomeputative sulfite oxidase subunit YedZ1e-89328
NC_011741:2091249:210218921021892102824636Escherichia coli IAI1 chromosome, complete genomeputative sulfite oxidase subunit YedZ2e-89328
NC_011353:2563056:257263225726322573267636Escherichia coli O157:H7 str. EC4115 chromosome, complete genomesulfite oxidase subunit YedZ2e-90331
NC_020209:3797830:381038738103873811007621Pseudomonas poae RE*1-1-14, complete genomesulfite oxidase subunit YedZ4e-1581.3
NC_013008:2561586:257161325716132572248636Escherichia coli O157:H7 str. TW14359 chromosome, complete genomesulfite oxidase subunit YedZ2e-90331
NC_011916:2967624:298715629871562987917762Caulobacter crescentus NA1000 chromosome, complete genomesulfite oxidase subunit YedZ1e-1996.7
NC_012947:1769438:179654917965491796854306Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completesulfite oxidase subunit YedZ6e-42170
NC_015730:3853065:386836038683603868965606Roseobacter litoralis Och 149 chromosome, complete genomesulfoxide reductase heme-binding subunit YedZ3e-2098.2
NC_015563:1172745:117373911737391174359621Delftia sp. Cs1-4 chromosome, complete genomesulfoxide reductase heme-binding subunit yedZ2e-1375.9
NC_018643:320197:331594331594332010417Alpha proteobacterium HIMB5 chromosome, complete genometransmembrane protein similar to ferric reductase, possible flavocytochrome6e-1270.9
NC_008563:2041345:204773220477322048367636Escherichia coli APEC O1, complete genomeYedZ8e-90329