Pre_GI: BLASTP Hits

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Query: NC_012917:833721:853112 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 853112, End: 854278, Length: 1167

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004547:913553:9347149347149358801167Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-150531
NC_012846:1837924:1867809186780918689871179Bartonella grahamii as4aup, complete genomeputative sugar transporter1e-94346
NC_009792:3225965:3225965322596532271551191Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-93342
NC_020300:1344453:1348001134800113491731173Bartonella australis Aust/NH1, complete genomeputative sugar transporter1e-77290
NC_016641:373623:3955093955093967501242Paenibacillus terrae HPL-003 chromosome, complete genomepermease of the major facilitator superfamily protein9e-1788.2
NC_007164:1839154:1871344187134418724831140Corynebacterium jeikeium K411, complete genomeputative permease of the major facilitator superfamily3e-1480.1
NC_015566:4662171:4668155466815546693181164Serratia sp. AS12 chromosome, complete genomehypothetical protein6e-1479
NC_017187:10320:1432414324155021179Arcobacter butzleri ED-1, complete genomeputative transport protein3e-1273.2
NC_009850:11076:1432414324155021179Arcobacter butzleri RM4018, complete genomeconserved hypothetical protein, putative MFS permease3e-1273.2
NC_010551:1462827:1475730147573014769711242Burkholderia ambifaria MC40-6 chromosome 1, complete sequenceprotein of unknown function DUF12283e-1066.6
NC_008800:3061484:3063522306352230646941173Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-1066.2
NC_015224:1703130:1720433172043317216051173Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein2e-0963.9
NC_019940:203718:2089102089102100821173Thioflavicoccus mobilis 8321 chromosome, complete genomearabinose efflux permease family protein3e-0860.1
NC_010172:480000:5291465291465303661221Methylobacterium extorquens PA1, complete genomeprotein of unknown function DUF12281e-0758.2
NC_016111:581143:5821125821125833081197Streptomyces cattleya NRRL 8057, complete genomeMajor facilitator family transporter1e-0757.8
NC_006155:1807902:1825357182535718265081152Yersinia pseudotuberculosis IP 32953, complete genomepossible MFS Superfamily transporter3e-0756.6
NC_004088:2937077:2939144293914429402951152Yersinia pestis KIM, complete genometransport protein3e-0756.6
NC_003143:1691000:1707339170733917084901152Yersinia pestis CO92, complete genomehypothetical protein3e-0756.6
NC_010634:1809500:1825566182556618267171152Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein3e-0756.6
NC_008150:905000:9212039212039223541152Yersinia pestis Antiqua, complete genomehypothetical protein3e-0756.6
NC_010465:2820500:2821372282137228225231152Yersinia pseudotuberculosis YPIII, complete genomeprotein of unknown function DUF12283e-0756.6
NC_005810:1520000:1536243153624315373941152Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-0756.6
NC_008149:2773139:2775206277520627763571152Yersinia pestis Nepal516, complete genomehypothetical protein3e-0756.6
NC_009381:1655731:1657798165779816589491152Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein3e-0756.6
NC_017265:2557476:2559543255954325606941152Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein3e-0756.6
NC_017168:3948514:3950581395058139517321152Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-0756.6
NC_017160:2054289:2056356205635620575071152Yersinia pestis D182038 chromosome, complete genomehypothetical protein3e-0756.6
NC_017154:1707500:1723937172393717250881152Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-0756.6
NC_014029:1760948:1781844178184417829951152Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-0756.6
NC_009708:2788855:2790922279092227920731152Yersinia pseudotuberculosis IP 31758 chromosome, complete genomemajor facilitator transporter3e-0756.6
NC_011662:131956:1494221494221506301209Thauera sp. MZ1T, complete genomeprotein of unknown function DUF12281e-0654.3
NC_004129:1741816:1767111176711117682711161Pseudomonas fluorescens Pf-5, complete genomemajor facilitator family transporter5e-0652.8
NC_016830:1719407:1741521174152117426931173Pseudomonas fluorescens F113 chromosome, complete genomeputative MFS Superfamily transporter precursor6e-0652.4