Pre_GI: BLASTP Hits

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Query: NC_004605:1092476:1110593 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 1110593, End: 1111168, Length: 576

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008321:3189974:321189232118923212503612Shewanella sp. MR-4, complete genometranscriptional regulator, TetR family4e-40164
NC_016641:2291363:231364123136412314216576Paenibacillus terrae HPL-003 chromosome, complete genomeTetR family transcriptional regulator5e-1994
NC_016047:637778:653172653172653747576Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetranscriptional regulator TetR2e-1892.4
NC_009725:496443:514054514054514629576Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein1e-1789.4
NC_009142:5519208:552635655263565526955600Saccharopolyspora erythraea NRRL 2338, complete genomeTetR-family transcriptional regulator2e-1788.6
NC_016935:1868839:189862518986251899203579Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator2e-1788.6
NC_015690:1348691:137475713747571375335579Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator4e-1787.8
NC_007492:3384077:339444033944403395021582Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family6e-1787
NC_009720:3281000:329115032911503291818669Xanthobacter autotrophicus Py2, complete genomeTetR family transcriptional regulator1e-1685.9
NC_013947:373862:390307390307390966660Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family4e-1684.3
NC_014623:9492000:949227594922759492889615Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeTetR family transcriptional regulator8e-1683.6
NC_007948:517893:533902533902534492591Polaromonas sp. JS666, complete genometranscriptional regulator, TetR family9e-1683.2
NC_012914:1923500:193114719311471931740594Paenibacillus sp. JDR-2, complete genometranscriptional regulator, TetR family1e-1582.8
NC_016935:2503071:254529025452902545868579Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator2e-1582.4
NC_015690:1967244:201240220124022012980579Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator2e-1582.4
NC_019897:73957:109118109118109699582Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator4e-1581.3
NC_015559:1478114:149093514909351491531597Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeTetR family transcriptional regulator6e-1580.5
NC_017186:2252438:225417822541782254768591Amycolatopsis mediterranei S699 chromosome, complete genomeTetR family transcriptional regulator3e-1478.2
NC_014318:2252417:225415722541572254747591Amycolatopsis mediterranei U32 chromosome, complete genomeTetR family transcriptional regulator3e-1478.2
UCMB5137:1:265826583233576Bacillus atrophaeus UCMB-5137hypothetical protein4e-1477.8
NC_015759:760671:764668764668765258591Weissella koreensis KACC 15510 chromosome, complete genomeTerR family transcriptional regulator4e-1477.8
NC_014664:1669642:168504116850411685649609Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeregulatory protein TetR6e-1477
NC_013406:3521489:354052835405283541106579Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator2e-1375.9
NC_008542:2631138:265003426500342650657624Burkholderia cenocepacia HI2424 chromosome 1, complete sequencetranscriptional regulator, TetR family6e-1373.9
NC_008060:1945597:196449319644931965116624Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencetranscriptional regulator, TetR family6e-1373.9
NC_007510:2805121:281997328199732820587615Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, TetR family7e-1270.5
NC_014153:2125551:213126221312622131957696Thiomonas intermedia K12 chromosome, complete genometranscriptional regulator, TetR family3e-1168.2
NC_007802:1991211:201816420181642018751588Jannaschia sp. CCS1, complete genometranscriptional regulator, TetR family5e-1167.4
NC_010084:988908:988908988908989543636Burkholderia multivorans ATCC 17616 chromosome 1, completeTetR family transcriptional regulator9e-1166.6
NC_010804:2518695:253523025352302535865636Burkholderia multivorans ATCC 17616 chromosome 1, completeTetR family transcriptional regulator9e-1166.6
NC_010551:2537876:255936425593642559978615Burkholderia ambifaria MC40-6 chromosome 1, complete sequencetranscriptional regulator, TetR family1e-1066.2
NC_013037:2851940:288141928814192882000582Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, TetR family2e-1065.9
NC_010170:1470755:148942714894271490008582Bordetella petrii, complete genometranscriptional regulator, TetR-family1e-1065.9
NC_002927:1292573:129502512950251295645621Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator4e-1064.7
NC_015856:3059737:307258730725873073210624Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator4e-1064.3
NC_014841:41773:551085510855716609Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetranscriptional regulator, TetR family5e-1063.9
NC_014659:4908182:491490549149054915444540Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator7e-1063.5
NC_014659:2737843:273784327378432738469627Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator7e-1063.5
NC_015856:3832000:383402238340223834645624Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator9e-1063.2
NC_018681:2985078:299752129975212998117597Nocardia brasiliensis ATCC 700358 chromosome, complete genometetr family transcriptional regulator1e-0963.2
NC_002927:4392768:441134744113474411967621Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator1e-0963.2
NC_010410:3719599:374375137437513744401651Acinetobacter baumannii AYE, complete genomeputative regulator (TetR/AcrR family)1e-0962.8
NC_016816:1137904:114302111430211143638618Pantoea ananatis LMG 5342, complete genometranscriptional regulator1e-0962.8
NC_014659:2737843:274255227425522743154603Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator3e-0961.6
NC_000964:732255:753154753154753738585Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein4e-0960.8
NC_021066:3028421:304263130426313043224594Raoultella ornithinolytica B6, complete genomeTetR family transcriptional regulator4e-0960.8
NC_020418:3102460:310548531054853106096612Morganella morganii subsp. morganii KT, complete genomeTranscriptional regulator, TetR family5e-0960.8
NC_020244:747762:771062771062771679618Bacillus subtilis XF-1, complete genomeputative transcriptional regulator (TetR family)6e-0960.5
NC_021177:2241647:224302222430222243660639Streptomyces fulvissimus DSM 40593, complete genomeTetR family transcriptional regulator1e-0859.7
NC_010815:40357:575715757158143573Geobacter lovleyi SZ plasmid pGLOV01, complete sequencetranscriptional regulator, TetR family1e-0859.3
NC_014306:4901390:491379349137934914401609Erwinia billingiae Eb661, complete genomeTranscriptional regulator, TetR family1e-0859.3
NC_017195:709098:731324731324731908585Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeYezE1e-0859.3
NC_016582:11380000:113875491138754911388190642Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator1e-0859.3
NC_013956:3273340:329451032945103295127618Pantoea ananatis LMG 20103 chromosome, complete genomeYcfQ1e-0859.3
NC_013235:5127148:513109951310995131689591Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, TetR family2e-0858.9
NC_009142:6086000:608623460862346086818585Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulatory protein3e-0858.5
NC_016514:2079975:209723320972332097853621Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YcfQ3e-0858.5
NC_020063:3690308:371432137143213714902582Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator2e-0858.5
NC_020063:2077233:208847920884792089114636Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator3e-0858.2
NC_015379:4249238:427499442749944275626633Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, TetR family3e-0858.2
NC_010002:4326509:432650943265094327135627Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family9e-0856.6
NC_015563:3203012:325163832516383252264627Delftia sp. Cs1-4 chromosome, complete genomeregulatory protein TetR9e-0856.6
NC_012968:1191037:120075812007581201360603Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family8e-0856.6
NC_014258:355845:365469365469366095627Pantoea vagans C9-1 plasmid pPag3, complete sequenceHTH-type transcriptional repressor AcnR8e-0856.6
NC_008146:861319:923050923050923598549Mycobacterium sp. MCS, complete genometranscriptional regulator, TetR family1e-0756.2
NC_008705:868623:931779931779932327549Mycobacterium sp. KMS, complete genometranscriptional regulator, TetR family1e-0756.2
NC_011002:703194:754095754095754643549Burkholderia cenocepacia J2315 chromosome 3, complete sequenceTetR family regulatory protein1e-0756.2
NC_000913:4462782:447214744721474472740594Escherichia coli K12, complete genomepredicted transcriptional regulator2e-0755.5
AC_000091:4472000:447880444788044479397594Escherichia coli W3110 DNA, complete genomepredicted transcriptional regulator2e-0755.5
NC_010473:4564590:457395545739554574548594Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transcriptional regulator2e-0755.5
NC_021184:1024305:104149110414911042111621Desulfotomaculum gibsoniae DSM 7213, complete genometranscriptional regulator3e-0755.1
NC_011742:4795733:480355848035584804151594Escherichia coli S88 chromosome, complete genometranscriptional regulator3e-0755.1
NC_010498:4821519:482934548293454829938594Escherichia coli SMS-3-5, complete genomeTetR family transcriptional regulator3e-0755.1
NC_009142:5459819:546278154627815463392612Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, TetR family5e-0754.3
NC_016628:935420:940067940067940657591Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, TetR family5e-0754.3
NC_010658:4494103:450496945049694505562594Shigella boydii CDC 3083-94, complete genometranscriptional regulator, TetR family4e-0754.3
NC_012947:3947238:395611439561143956707594Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeTetR family transcriptional regulator4e-0754.3
NC_012967:4449576:445740144574014457994594Escherichia coli B str. REL606 chromosome, complete genomeputative transcriptional regulator4e-0754.3
NC_016582:11672500:116874191168741911688027609Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator4e-0754.3
NC_013929:6923884:693561869356186936241624Streptomyces scabiei 87.22 chromosome, complete genomeTetR family transcriptional regulator1e-0652.8
NC_012590:850130:854133854133854525393Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein2e-0652
NC_015690:6595395:660548766054876606074588Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYezE3e-0651.6