Pre_GI: BLASTP Hits

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Query: NC_004578:6138669:6157343 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6157343, End: 6160921, Length: 3579

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:809457:8248258248258283613537Pseudomonas denitrificans ATCC 13867, complete genometype VI secretion protein IcmF01534
NC_009439:101174:1011741011741047133540Pseudomonas mendocina ymp, complete genomeImcF domain-containing protein01401
NC_007645:4423507:4440744444074444442023459Hahella chejuensis KCTC 2396, complete genomehypothetical protein1e-118428
NC_018868:973379:9733799733799769153537Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein1e-112409
NC_017192:2216914:2230436223043622338013366Arcobacter sp. L, complete genomehypothetical protein2e-110401
NC_004605:1092476:1095070109507010985883519Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein2e-93344
NC_018000:2964500:2989499298949929930293531Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein2e-85318
NC_014306:679888:6798886798886835083621Erwinia billingiae Eb661, complete genomeType VI secretion system, IcmF7e-70266
NC_012913:1832500:1849033184903318525303498Aggregatibacter aphrophilus NJ8700, complete genometype VI secretion protein IcmF7e-69263
NC_003143:4006884:4012390401239040159233534Yersinia pestis CO92, complete genomehypothetical protein3e-68261
NC_009381:222735:2282322282322317653534Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein3e-68261
NC_014029:3958811:3964317396431739678503534Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-68261
NC_017154:3898925:3904431390443139079643534Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-68261
NC_017168:1631052:1636558163655816400913534Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-68261
NC_017265:4265659:4278317427831742818503534Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein3e-68261
NC_008740:4109000:4125749412574941293333585Marinobacter aquaeolei VT8, complete genometranscriptional regulator, Fis family2e-68261
NC_010634:4234932:4246637424663742501703534Yersinia pseudotuberculosis PB1/+, complete genometype VI secretion protein IcmF2e-67258
NC_006155:4302826:4315540431554043190733534Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein2e-67258
NC_009708:372422:3779283779283814613534Yersinia pseudotuberculosis IP 31758 chromosome, complete genomelipoprotein2e-67258
NC_010465:429095:4346014346014381343534Yersinia pseudotuberculosis YPIII, complete genometype VI secretion protein IcmF2e-67258
NC_014355:1865003:1882727188272718863563630Candidatus Nitrospira defluvii, complete genomehypothetical protein4e-66254
NC_012962:293976:3021943021943057393546Photorhabdus asymbiotica, complete genomehypothetical protein5e-61237
NC_014228:4331327:4338297433829743419023606Xenorhabdus nematophila ATCC 19061, complete genomeConserved hypothetical protein (probable component of SST VI cluster)3e-60234
NC_020064:2921809:2921809292180929254533645Serratia marcescens FGI94, complete genometype VI secretion protein IcmF2e-59232
NC_005126:349658:3824313824313859763546Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-58228
NC_013892:274297:2849322849322885013570Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-58227
NC_005126:349658:3568883568883604333546Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein7e-58226
NC_008313:691692:7102487102487140693822Ralstonia eutropha H16 chromosome 1, complete sequenceprotein of unknown function, ImcF-related1e-55219
NC_016816:1823127:1823127182312718267533627Pantoea ananatis LMG 5342, complete genometype VI secretion protein IcmF1e-53213
NC_011740:1991941:2010341201034120138623522Escherichia fergusonii ATCC 35469, complete genomeIcmF-like protein5e-53210
NC_015968:4117835:4135929413592941395883660Enterobacter asburiae LF7a chromosome, complete genometype VI secretion protein IcmF4e-51204
NC_011205:1186097:1208040120804012115013462Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-50202
NC_016831:1905289:1905289190528919087503462Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-50202
NC_011149:1077589:1095358109535810988193462Salmonella enterica subsp. enterica serovar Agona str. SL483,type VI secretion protein IcmF1e-50202
NC_011988:1036618:1056348105634810598423495Agrobacterium vitis S4 chromosome 2, complete genomeIcmF family protein1e-50202
NC_011274:1094379:1116332111633211198533522Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein3e-50201
NC_016902:3863932:3866111386611138696353525Escherichia coli KO11FL chromosome, complete genometype VI secretion protein IcmF1e-49199
CP002185:234719:2422682422682457923525Escherichia coli W, complete genomeIcmF-like protein1e-49199
CP002516:3863932:3866111386611138696353525Escherichia coli KO11, complete genometype VI secretion protein IcmF1e-49199
NC_010084:3173757:3173757317375731777043948Burkholderia multivorans ATCC 17616 chromosome 1, completetype VI secretion protein IcmF2e-39165
NC_007510:409843:4438784438784478253948Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein2e-38162
NC_014323:816027:8334198334198372943876Herbaspirillum seropedicae SmR1 chromosome, complete genometransmembrane protein4e-38160
NC_007005:5882205:5887089588708958895812493Pseudomonas syringae pv. syringae B728a, complete genomeOmpA/MotB1e-37159
NC_005773:106000:1406801406801431722493Pseudomonas syringae pv. phaseolicola 1448A, complete genomeOmpA domain protein5e-37157
NC_013282:1256769:1280666128066612844513786Cronobacter turicensis, complete genomehypothetical protein2e-36155
NC_014323:4619344:4619344461934446231443801Herbaspirillum seropedicae SmR1 chromosome, complete genometransmembrane protein9e-35149
NC_008570:2014151:2014151201415120176363486Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeImcF family protein9e-35149
NC_013421:1173051:1173051117305111765483498Pectobacterium wasabiae WPP163, complete genometype VI secretion protein IcmF2e-34148
NC_014931:6031645:6031645603164560354903846Variovorax paradoxus EPS chromosome, complete genometype VI secretion protein IcmF5e-34147
NC_011294:1085447:1107409110740911100272619Salmonella enterica subsp. enterica serovar Enteritidis str7e-34147
NC_003296:941920:9611259611259650663942Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSMEMBRANE PROTEIN1e-33146
NC_014310:811977:8415608415608454893930Ralstonia solanacearum PSI07 megaplasmid, complete sequencesecretion system protein2e-33145
NC_008391:271254:2874242874242915214098Burkholderia cepacia AMMD chromosome 2, complete sequenceImcF domain protein1e-31139
NC_010805:2432167:2435836243583624397893954Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein4e-31137
NC_010086:20876:3551535515394683954Burkholderia multivorans ATCC 17616 chromosome 2, completetype VI secretion protein IcmF4e-31137
NC_005773:106000:1441241441241480443921Pseudomonas syringae pv. phaseolicola 1448A, complete genomeImcF-related family3e-29131
NC_007005:5882205:5882205588220558861373933Pseudomonas syringae pv. syringae B728a, complete genomeImcF-related:Protein of unknown function DUF12154e-29130
NC_007511:2072838:2078291207829120822893999Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein5e-27124
NC_010804:324396:3496073496073510161410Burkholderia multivorans ATCC 17616 chromosome 1, complete1e-25119
NC_007511:1094050:1110148111014811142574110Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein3e-25118
NC_010086:871723:8911198911198952194101Burkholderia multivorans ATCC 17616 chromosome 2, completetype VI secretion protein IcmF3e-21105
NC_010805:1576735:1580085158008515841854101Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein3e-21105
NC_012731:3193880:3195777319577731991933417Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein1e-1999.8
NC_004917:241053:2432372432372467913555Helicobacter hepaticus ATCC 51449, complete genomehypothetical protein3e-1998.6
NC_009648:2465613:2467510246751024709203411Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein4e-1997.8
NC_011283:2103500:2116315211631521192812967Klebsiella pneumoniae 342 chromosome, complete genomeImcF-related family protein3e-1894.7
NC_016845:3238507:3240404324040432438143411Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein5e-1894.4
NC_014733:1223359:1241633124163312437472115Methylovorus sp. MP688 chromosome, complete genometype VI secretion protein icmf2e-1482.4
NC_015062:130359:1432731432731466893417Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceImcF domain protein6e-1480.9
NC_017060:125480:1401031401031435193417Rahnella aquatilis HX2 plasmid PRA1, complete sequenceImcF domain-containing protein6e-1480.9
NC_009802:114749:1427701427701462583489Campylobacter concisus 13826, complete genome2e-1378.6
NC_013282:2026083:2050468205046820537793312Cronobacter turicensis, complete genomehypothetical protein3e-1275.1
NC_015963:117178:1245971245971280313435Enterobacter asburiae LF7a plasmid pENTAS01, complete sequencehypothetical protein3e-1275.1
NC_014121:1822895:1834869183486918383423474Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completetype VI secretion system protein ImpL4e-1171.2
NC_016612:5600177:5603309560330956067283420Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein7e-1170.5
NC_008563:3119284:3133547313354731368853339Escherichia coli APEC O1, complete genomehypothetical protein3e-1068.6
NC_009648:3476000:3487423348742334905003078Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein4e-1068.2
NC_012721:710887:7242107242107277733564Burkholderia glumae BGR1 chromosome 2, complete genomeImcF-related protein9e-1067
NC_013956:4579759:4579759457975945832923534Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein3e-0965.5
NC_011283:942594:9464689464689498033336Klebsiella pneumoniae 342 chromosome, complete genomeImcF domain-containing protein3e-0965.1
NC_014118:1171411:1172998117299811765823585Burkholderia sp. CCGE1002 chromosome chromosome 2, completeImcF domain protein3e-0862
NC_014539:3619511:3622840362284036263163477Burkholderia sp. CCGE1003 chromosome 1, complete sequenceImcF domain-containing protein4e-0861.2
NC_005126:4919689:4927191492719149305503360Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein1e-0759.7