Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3835511 Shigella flexneri 2a str. 301, complete genome

Start: 3835511, End: 3836206, Length: 696

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:4373961:4393421439342143944911071Escherichia coli UMN026 chromosome, complete genomeputative fimbrial protein LpfD2e-100365
NC_010498:4166903:4186355418635541874251071Escherichia coli SMS-3-5, complete genomelong polar fimbrial operon protein LpfD2e-100365
NC_011750:4490573:4510026451002645110961071Escherichia coli IAI39 chromosome, complete genomeputative fimbrial protein LpfD; putative adhesin2e-100365
NC_002655:4747926:4767426476742647685081083Escherichia coli O157:H7 EDL933, complete genomeputative fimbrial protein3e-49194
NC_002695:4678945:4698445469844546995271083Escherichia coli O157:H7 str. Sakai, complete genomeputative fimbrial protein3e-49194
NC_011353:4782040:4801540480154048026221083Escherichia coli O157:H7 str. EC4115 chromosome, complete genomefimbrial family protein3e-49194
NC_013008:4738083:4757583475758347586651083Escherichia coli O157:H7 str. TW14359 chromosome, complete genomefimbrial protein3e-49194
NC_013941:4567820:4585943458594345870251083Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeFimbrial family protein3e-49194
NC_002695:4678945:4699555469955547006251071Escherichia coli O157:H7 str. Sakai, complete genomeputative fimbrial protein2e-38159
NC_002655:4747926:4768536476853647696061071Escherichia coli O157:H7 EDL933, complete genomeputative fimbrial protein2e-38159
NC_011353:4782040:4802650480265048037201071Escherichia coli O157:H7 str. EC4115 chromosome, complete genomefimbrial protein2e-38159
NC_013008:4738083:4758693475869347597631071Escherichia coli O157:H7 str. TW14359 chromosome, complete genomefimbrial protein2e-38159
NC_013941:4567820:4587053458705345881441092Escherichia coli O55:H7 str. CB9615 chromosome, complete genomefimbrial protein2e-38159
NC_009778:2227627:2274220227422022752481029Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-23110
NC_020064:3790472:3802937380293738039981062Serratia marcescens FGI94, complete genomeP pilus assembly protein, pilin FimA2e-1789.7
NC_011601:3951324:3959567395956739606221056Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomefimbrial protein3e-1272
NC_016810:604813:6081636081636091701008Salmonella enterica subsp. enterica serovar Typhimurium strFimH protein3e-0755.5
NC_003197:606048:6086756086756096821008Salmonella typhimurium LT2, complete genomeminor fimbrial subunit3e-0755.5
NC_011094:593100:5957275957275967341008Salmonella enterica subsp. enterica serovar Schwarzengrund strmannose binding protein FimH3e-0755.5
NC_014618:3482053:3502091350209135030921002Enterobacter cloacae SCF1 chromosome, complete genomeminor fimbrial subunit3e-0755.5
NC_016856:606742:6093696093696103761008Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sminor fimbrial subunit3e-0755.5
NC_016857:604792:6081636081636091701008Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74minor fimbrial subunit3e-0755.5
NC_016860:644095:6467226467226477291008Salmonella enterica subsp. enterica serovar Typhimurium strminor fimbrial subunit3e-0755.5
NC_016863:606742:6093696093696103761008Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1minor fimbrial subunit3e-0755.5
NC_017046:604789:6081606081606091671008Salmonella enterica subsp. enterica serovar Typhimurium str. 798FimH protein3e-0755.5
NC_006511:2251022:2264884226488422658911008Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCFimH protein precursor3e-0755.5
NC_011147:2247460:2260068226006822610751008Salmonella enterica subsp. enterica serovar Paratyphi A strFimH protein3e-0755.5
NC_011750:527470:530122530122531099978Escherichia coli IAI39 chromosome, complete genomeputative fimbrial-like adhesin protein8e-0753.9
NC_012125:600586:6032136032136042201008Salmonella enterica subsp. enterica serovar Paratyphi C strainFimH protein8e-0753.9
NC_011274:603901:6065286065286075351008Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91FimH protein1e-0653.1
NC_015424:525039:5351215351215361491029Aeromonas veronii B565 chromosome, complete genometype I pilus assembly protein FimE1e-0653.1
NC_006905:651732:6543656543656553721008Salmonella enterica subsp. enterica serovar Choleraesuis strminor fimbrial subunit2e-0652.8
NC_011415:600375:6058296058296068361008Escherichia coli SE11 chromosome, complete genomeputative fimbrial protein3e-0652.4
NC_010473:498252:500891500891501874984Escherichia coli str. K-12 substr. DH10B, complete genomepredicted fimbrial-like adhesin protein3e-0652.4
NC_012759:461680:464319464319465302984Escherichia coli BW2952 chromosome, complete genomeputative fimbrial-like adhesin protein3e-0652.4
AC_000091:558920:561565561565562542978Escherichia coli W3110 DNA, complete genomepredicted fimbrial-like adhesin protein3e-0652.4
NC_000913:558920:561565561565562542978Escherichia coli K12, complete genomepredicted fimbrial-like adhesin protein3e-0652.4
NC_012947:3231893:324997232499723250949978Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeP pilus assembly protein pilin FimA-like protein3e-0652.4
NC_012967:531000:534456534456535433978Escherichia coli B str. REL606 chromosome, complete genomeputative fimbrial-like adhesin protein3e-0652.4
NC_010102:2495441:2508402250840225094091008Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0652
NC_011294:585500:5881565881565891631008Salmonella enterica subsp. enterica serovar Enteritidis strFimH protein5e-0651.6
NC_016831:2402893:2415235241523524162421008Salmonella enterica subsp. enterica serovar Gallinarum/pullorumFimH protein5e-0651.6
NC_011149:588895:5915225915225925291008Salmonella enterica subsp. enterica serovar Agona str. SL483,mannose binding protein FimH5e-0651.6
NC_016832:2363136:2376262237626223772691008Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein5e-0651.2
NC_003198:598000:6006336006336016401008Salmonella enterica subsp. enterica serovar Typhi str. CT18,FimH protein precursor5e-0651.2
NC_004631:2366335:2379461237946123804681008Salmonella enterica subsp. enterica serovar Typhi Ty2, completeFimH protein precursor5e-0651.2
NC_011205:609464:6120916120916130981008Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853mannose binding protein FimH7e-0650.8
NC_011083:654479:6571066571066581131008Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,mannose binding protein FimH8e-0650.8
NC_011751:3984236:3989994398999439911451152Escherichia coli UMN026 chromosome, complete genomeputative fimbrial adhesin1e-0550.4