Pre_GI: BLASTP Hits

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Query: NC_003063:1128370:1128370 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 1128370, End: 1130667, Length: 2298

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:922357:9440899440899461882100Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein01378
NC_008314:2686851:2692615269261526946212007Ralstonia eutropha H16 chromosome 2, complete sequenceputative helicase8e-32139
NC_012912:4194821:4195622419562241976672046Dickeya zeae Ech1591, complete genomeP4 alpha zinc-binding domain protein2e-31137
NC_013592:4295449:4298421429842143004662046Dickeya dadantii Ech586, complete genomeP4 alpha zinc-binding domain protein3e-31137
NC_012880:4117376:4117865411786541199102046Dickeya dadantii Ech703, complete genomeP4 alpha zinc-binding domain protein3e-30134
NC_014500:443874:4601454601454621902046Dickeya dadantii 3937 chromosome, complete genomeDNA primase6e-30133
NC_009720:1248866:1251196125119612529681773Xanthobacter autotrophicus Py2, complete genomeAAA ATPase2e-29131
NC_014010:175500:1813701813701832171848Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeAAA ATPase1e-26122
NC_004088:3382148:3397991339799133990851095Yersinia pestis KIM, complete genomehypothetical protein4e-26120
NC_005810:1130251:1146101114610111471891089Yersinia pestis biovar Microtus str. 91001, complete genomeputative regulatory prophage protein3e-26120
NC_008149:3251196:3267046326704632681341089Yersinia pestis Nepal516, complete genomeregulatory prophage protein3e-26120
NC_003143:1233128:1235740123574012368281089Yersinia pestis CO92, complete genomeputative regulatory prophage protein3e-26120
NC_008150:650899:6524766524766535641089Yersinia pestis Antiqua, complete genomeputative regulatory prophage protein3e-26120
NC_010159:1417993:1419892141989214209801089Yersinia pestis Angola, complete genomeYabA3e-26120
NC_009381:2939782:2955631295563129567191089Yersinia pestis Pestoides F chromosome, complete genomeregulatory prophage protein3e-26120
NC_017265:1136000:1137070113707011381581089Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative regulatory prophage protein3e-26120
NC_017168:4155143:4157756415775641588441089Yersinia pestis A1122 chromosome, complete genomeputative regulatory prophage protein3e-26120
NC_017160:1507500:1523493152349315245811089Yersinia pestis D182038 chromosome, complete genomeputative regulatory prophage protein3e-26120
NC_017154:1225500:1227030122703012281181089Yersinia pestis D106004 chromosome, complete genomeputative regulatory prophage protein3e-26120
NC_014029:1283500:1284937128493712860251089Yersinia pestis Z176003 chromosome, complete genomeputative regulatory prophage protein3e-26120
NC_014121:1682638:1709461170946117108701410Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative DNA primase2e-24115
NC_013353:1305712:1329897132989713312971401Escherichia coli O103:H2 str. 12009, complete genomeDNA primase3e-24114
AP010958:1305712:1329897132989713312971401Escherichia coli O103:H2 str. 12009 DNA, complete genomeDNA primase3e-24114
NC_015740:2998500:3012693301269330138141122Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein4e-20100
NC_016642:471656:4716564716564727531098Pseudovibrio sp. FO-BEG1 chromosome, complete genomehelicase6e-20100
NC_015422:1116359:1129735112973511310001266Alicycliphilus denitrificans K601 chromosome, complete genomeAAA ATPase1e-1999
NC_014837:1144500:115761111576111158447837Pantoea sp. At-9b chromosome, complete genome4e-1997.4
NC_007651:3560652:3577024357702435789671944Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein1e-1689.4
NC_009648:4497749:450723045072304507979750Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein1e-1689
NC_009484:1299500:1306311130631113084642154Acidiphilium cryptum JF-5 chromosome, complete genomehypothetical protein2e-1481.6
NC_016002:1938749:1944321194432119464202100Pseudogulbenkiania sp. NH8B, complete genomeRecA-family ATPase-like protein6e-1480.1
NC_010505:2103887:2121721212172121229351215Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein8e-1273.2
NC_010505:4396800:4408668440866844098161149Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein8e-1169.7
NC_011985:3380842:3392861339286133939551095Agrobacterium radiobacter K84 chromosome 1, complete genomehypothetical protein3e-1067.8
NC_010511:4415731:4430604443060444327902187Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein6e-1067
NC_010511:7400255:7400883740088374031622280Methylobacterium sp. 4-46 chromosome, complete genomehypothetical protein1e-0965.9
NC_013757:1544348:1561755156175515628671113Geodermatophilus obscurus DSM 43160, complete genomehypothetical protein1e-0862.8