Pre_GI: BLASTN Hits

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Query: NC_007951:1928906 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 1928906, End: 1952863, Length: 23958

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007951:2206263*2206263222784621584Burkholderia xenovorans LB400 chromosome 1, complete sequence05325BLASTN svgBLASTP svg
NC_007951:20873852087385211670629322Burkholderia xenovorans LB400 chromosome 1, complete sequence05325BLASTN svgBLASTP svg
NC_007952:32382413238241325679118551Burkholderia xenovorans LB400 chromosome 2, complete sequence04684BLASTN svgBLASTP svg
NC_007951:76950076950079672027221Burkholderia xenovorans LB400 chromosome 1, complete sequence04684BLASTN svgBLASTP svg
NC_010087:376918*37691844748870571Burkholderia multivorans ATCC 17616 chromosome 3, complete04308BLASTN svgBLASTP svg
NC_010801:48160148160150140619806Burkholderia multivorans ATCC 17616 chromosome 3, complete04248BLASTN svgBLASTP svg
NC_010086:18163781816378188976873391Burkholderia multivorans ATCC 17616 chromosome 2, complete02964BLASTN svgBLASTP svg
NC_010805:57570957570964147565767Burkholderia multivorans ATCC 17616 chromosome 2, complete02964BLASTN svgBLASTP svg
NC_007434:13225001322500135459932100Burkholderia pseudomallei 1710b chromosome I, complete sequence7e-118432BLASTN svgBLASTP svg
NC_008060:2913671*2913671294708933419Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence1e-94355BLASTN svgBLASTP svg
NC_010804:2206000*2206000222893422935Burkholderia multivorans ATCC 17616 chromosome 1, complete1e-94355BLASTN svgBLASTP svg
NC_010087:31906331906336759948537Burkholderia multivorans ATCC 17616 chromosome 3, complete5e-94353BLASTN svgBLASTP svg
NC_010801:55027055027059663446365Burkholderia multivorans ATCC 17616 chromosome 3, complete5e-94353BLASTN svgBLASTP svg
NC_007952:31960853196085323399537911Burkholderia xenovorans LB400 chromosome 2, complete sequence1e-88335BLASTN svgBLASTP svg
NC_007953:10889331088933110876919837Burkholderia xenovorans LB400 chromosome 3, complete sequence1e-63252BLASTN svgBLASTP svg
NC_008543:2696377*2696377272466728291Burkholderia cenocepacia HI2424 chromosome 2, complete sequence3e-43184BLASTN svgBLASTP svg
NC_008061:2548849*2548849257109922251Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence7e-41176BLASTN svgBLASTP svg
NC_015186:2197236*2197236229649299257Acidiphilium multivorum AIU301, complete genome6e-32147BLASTN svgBLASTP svg
NC_021150:34164503416450343409917650Azotobacter vinelandii CA6, complete genome3e-21111BLASTN svgBLASTP svg
NC_012560:34164513416451343409917649Azotobacter vinelandii DJ, complete genome3e-21111BLASTN svgBLASTP svg
NC_004463:55409245540924556841727494Bradyrhizobium japonicum USDA 110, complete genome3e-21111BLASTN svgBLASTP svg
NC_002678:48591114859111488349624386Mesorhizobium loti MAFF303099, complete genome8e-19103BLASTN svgBLASTP svg
NC_011002:77224377224379174119499Burkholderia cenocepacia J2315 chromosome 3, complete sequence5e-1797.6BLASTN svgBLASTP svg
NC_004463:18725371872537189486322327Bradyrhizobium japonicum USDA 110, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_013851:3321853*3321853335256230710Allochromatium vinosum DSM 180 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_007952:32833943283394332059937206Burkholderia xenovorans LB400 chromosome 2, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_007384:17633751763375178359920225Shigella sonnei Ss046, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008253:3941938*3941938399883856901Escherichia coli 536, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010660:864458644510942022976Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence1e-1489.7BLASTN svgBLASTP svg
NC_007951:19715841971584198959918016Burkholderia xenovorans LB400 chromosome 1, complete sequence5e-1487.7BLASTN svgBLASTP svg
NC_007951:47416204741620476397822359Burkholderia xenovorans LB400 chromosome 1, complete sequence5e-1487.7BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence3e-1281.8BLASTN svgBLASTP svg
NC_003047:33600003360000341859958600Sinorhizobium meliloti 1021, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007951:29046442904644294513440491Burkholderia xenovorans LB400 chromosome 1, complete sequence1e-1179.8BLASTN svgBLASTP svg
NC_007712:19265001926500194435817859Sodalis glossinidius str. 'morsitans', complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007712:20285002028500208441455915Sodalis glossinidius str. 'morsitans', complete genome3e-0971.9BLASTN svgBLASTP svg
NC_020209:39737639737645309955724Pseudomonas poae RE*1-1-14, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010524:47887534788753481217723425Leptothrix cholodnii SP-6, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010170:11032241103224112440821185Bordetella petrii, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_010501:90800090800093935831359Pseudomonas putida W619, complete genome7e-0763.9BLASTN svgBLASTP svg