Pre_GI Gene

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Host: NC_007951 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007951:1971584 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
197158419725971014Putative bifunctional oxidoreductasealginate lyaseQuickGO ontologyBLASTP
19726331973334702Dihydropteridine reductaseQuickGO ontologyBLASTP
19734311973718288hypothetical proteinBLASTP
19737761974135360Putative murein hydrolase exporter LrgAholin likeQuickGO ontologyBLASTP
19741321974854723Putative transmembrane protein murein hydrolase LrgB likeQuickGO ontologyBLASTP
19752781975985708hypothetical protein
197603919771001062Putative luciferase-like monooxygenaseQuickGO ontologyBLASTP
19771511977732582hypothetical protein
19779081978645738Putative short-chain dehydrogenaseoxidoreductaseQuickGO ontologyBLASTP
19786601979655996Putative D-3-phosphoglycerate dehydrogenaseNAD- bindingQuickGO ontologyBLASTP
19797511980056306hypothetical protein
19801281980988861Putative short-chain dehydrogenaseoxidoreductaseQuickGO ontologyBLASTP
19812341981605372hypothetical protein
19815871982240654Transcriptional regulator TetR familyQuickGO ontologyBLASTP
19823151982554240Hypothetical Cytosolic Protein YCII-relatedQuickGO ontology
19831391984071933Transcriptional regulator LysR familyQuickGO ontologyBLASTP
198407219853581287hypothetical proteinBLASTP
198583519873281494Putative transposase integrase proteinQuickGO ontologyBLASTP
19873251988143819Putative IS21 transposase-associated ATP- binding proteinQuickGO ontologyBLASTP
19890341989465432hypothetical proteinBLASTP