Pre_GI Gene

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Host: NC_008543 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008543:2696377 Burkholderia cenocepacia HI2424 chromosome 2, complete sequence

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
269637727048728496glycosyltransferase 36QuickGO ontologyBLASTP
27050672705519453hypothetical proteinBLASTP
27058472706719873band 7 proteinQuickGO ontologyBLASTP
27075562707891336transposase IS116IS110IS902 family proteinQuickGO ontologyBLASTP
270795227093731422hypothetical proteinBLASTP
27093752710355981hypothetical proteinBLASTP
271035527123822028hypothetical proteinBLASTP
27126912713500810Diaminopimelate epimeraseQuickGO ontologyBLASTP
27134972714384888RNA polymerase sigma-24 subunit ECF subfamilyQuickGO ontologyBLASTP
27145782715057480alkylhydroperoxidase like protein AhpD familyQuickGO ontologyBLASTP
27151302715525396Cupin 2 conserved barrel domain proteinQuickGO ontologyBLASTP
271556027166391080transcriptional regulator LysR familyQuickGO ontologyBLASTP
27168452717600756NmrA family proteinQuickGO ontologyBLASTP
27176242718139516OsmC family proteinQuickGO ontologyBLASTP
27182012718629429PRC-barrel domain proteinQuickGO ontologyBLASTP
271902527201551131phospho-2-dehydro-3-deoxyheptonate aldolaseQuickGO ontologyBLASTP
272034927216711323Triacylglycerol lipaseQuickGO ontologyBLASTP
27218682722629762hypothetical proteinBLASTP
27227882723681894protein of unknown function DUF480QuickGO ontologyBLASTP
27239062724667762short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP