Pre_GI: BLASTP Hits

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Query: NC_017376:1324000:1333595 Helicobacter pylori SNT49 chromosome, complete genome

Start: 1333595, End: 1333795, Length: 201

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017358:1342000:135117013511701351370201Helicobacter pylori Cuz20 chromosome, complete genome50S ribosomal protein L299e-1785.5
NC_014560:1309470:131985513198551320055201Helicobacter pylori SJM180 chromosome, complete genome50S ribosomal protein L299e-1785.5
NC_017368:1300000:130935313093531309553201Helicobacter pylori F16, complete genome50S ribosomal protein L293e-1683.6
NC_011498:1345623:135598513559851356185201Helicobacter pylori P12, complete genome50S ribosomal protein L294e-1683.2
NC_017365:77150:878648786488064201Helicobacter pylori F30, complete genome50S ribosomal protein L295e-1683.2
NC_017372:1373766:138394413839441384144201Helicobacter pylori India7 chromosome, complete genome50S ribosomal protein L295e-1683.2
NC_017063:1362000:137140213714021371602201Helicobacter pylori ELS37 chromosome, complete genome50S ribosomal protein L296e-1682.8
NC_017355:1299874:131010613101061310306201Helicobacter pylori v225d chromosome, complete genome50S ribosomal protein L296e-1682.8
NC_017361:1303553:131407113140711314271201Helicobacter pylori SouthAfrica7 chromosome, complete genome50S ribosomal protein L292e-1581.3
NC_017375:1317398:132762213276221327822201Helicobacter pylori 83 chromosome, complete genome50S ribosomal protein L292e-1581.3
NC_017371:1358000:136750813675081367708201Helicobacter pylori Gambia94/24 chromosome, complete genome50S ribosomal protein L292e-1581.3
NC_017367:1333811:134403113440311344231201Helicobacter pylori F57, complete genome50S ribosomal protein L292e-1581.3
NC_000921:1343701:135419813541981354398201Helicobacter pylori J99, complete genome50S ribosomal protein L294e-1580.1
NC_008229:118000:129104129104129289186Helicobacter acinonychis str. Sheeba, complete genome50S ribosomal protein L293e-1270.5
NC_009802:1886000:189593118959311896125195Campylobacter concisus 13826, complete genomeribosomal protein L298e-0752.4