Pre_GI: BLASTP Hits

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Query: NC_017372:748097:764280 Helicobacter pylori India7 chromosome, complete genome

Start: 764280, End: 766187, Length: 1908

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017375:77142:8601186011880802070Helicobacter pylori 83 chromosome, complete genomehypothetical protein01046
NC_014560:1366747:1397845139784513998211977Helicobacter pylori SJM180 chromosome, complete genomehypothetical protein0876
NC_017371:1470582:1486279148627914883242046Helicobacter pylori Gambia94/24 chromosome, complete genomehypothetical protein0803
NC_014256:485969:5017645017645037912028Helicobacter pylori B8 chromosome, complete genomehypothetical protein0799
NC_017063:834674:8706018706018723101710Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein0765
NC_017366:1055319:1074276107427610756401365Helicobacter pylori F32, complete genomehypothetical protein0738
NC_017378:1518529:1539628153962815411481521Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein0694
NC_011498:1391788:141533414153341415765432Helicobacter pylori P12, complete genomehypothetical protein1e-1792
NC_017372:748097:7529897529897550192031Helicobacter pylori India7 chromosome, complete genomehypothetical protein2e-1068.2
NC_017379:996500:1015676101567610177152040Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein8e-0756.2
NC_000921:1007519:1045778104577810478112034Helicobacter pylori J99, complete genomehypothetical protein4e-0653.5
NC_017371:1470582:1474666147466614766962031Helicobacter pylori Gambia94/24 chromosome, complete genomerelaxase4e-0653.5
NC_000915:1044000:1058373105837310601751803Helicobacter pylori 26695, complete genomehypothetical protein5e-0653.5
NC_018939:1044000:1058391105839110602171827Helicobacter pylori 26695 chromosome, complete genomerelaxase5e-0653.5
NC_017362:1512959:1517467151746715195002034Helicobacter pylori Lithuania75 chromosome, complete genomerelaxase7e-0652.8