Pre_GI: BLASTP Hits

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Query: NC_016822:1304398:1304398 Shigella sonnei 53G, complete genome

Start: 1304398, End: 1305498, Length: 1101

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:2153243:2172917217291721740171101Escherichia coli SE11 chromosome, complete genomecytochrome c-type protein0713
NC_007384:1320287:1320287132028713213871101Shigella sonnei Ss046, complete genomeputative cytochrome C-type protein0712
NC_008258:1934479:1957641195764119587411101Shigella flexneri 5 str. 8401, complete genomeputative cytochrome C-type protein0711
NC_007643:1504758:1510692151069215118701179Rhodospirillum rubrum ATCC 11170, complete genomeMembrane-bound tetrahaem cytochrome TorC/YecK2e-55216
NC_011149:3930358:3947845394784539490291185Salmonella enterica subsp. enterica serovar Agona str. SL483,trimethylamine-N-oxide reductase c-type cytochrome TorC1e-52207
NC_015761:3698520:3715596371559637167801185Salmonella bongori NCTC 12419, complete genomecytochrome c-type protein1e-52207
NC_010067:3753971:3754047375404737552311185Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-52206
NC_011147:3789696:3807095380709538082791185Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein5e-52205
NC_011094:3887648:3905143390514339063271185Salmonella enterica subsp. enterica serovar Schwarzengrund strtrimethylamine-N-oxide reductase c-type cytochrome TorC5e-52205
NC_010102:3955479:3972235397223539734191185Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein5e-52205
NC_003197:4005857:4023353402335340245371185Salmonella typhimurium LT2, complete genometrimethylamine N-oxide reductase cytochrome c-like subunit5e-52205
NC_011083:4020000:4037560403756040387441185Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,cytochrome c-type protein torC5e-52205
NC_006511:3794017:3811416381141638126001185Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein5e-52205
NC_006905:3942753:3962360396236039635441185Salmonella enterica subsp. enterica serovar Choleraesuis strtrimethylamine N-oxide reductase, cytochrome c-type subunit, also has activity as negativer regulator of tor operon5e-52205
NC_011205:4038884:4056399405639940575831185Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853trimethylamine-N-oxide reductase c-type cytochrome TorC5e-52205
NC_011294:3880500:3898009389800938991931185Salmonella enterica subsp. enterica serovar Enteritidis strcytochrome c-type protein5e-52205
NC_016810:4027170:4044666404466640458501185Salmonella enterica subsp. enterica serovar Typhimurium strcytochrome c-type protein5e-52205
NC_016856:4019549:4037045403704540382291185Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Strimethylamine N-oxide reductase cytochrome c-like subunit5e-52205
NC_016857:4025767:4044667404466740458511185Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74trimethylamine N-oxide reductase cytochrome c-like subunit5e-52205
NC_016860:4110968:4128464412846441296481185Salmonella enterica subsp. enterica serovar Typhimurium strcytochrome c-type protein5e-52205
NC_016863:3967156:3984652398465239858361185Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1trimethylamine N-oxide reductase cytochrome c-like subunit5e-52205
NC_017046:4025998:4043494404349440446781185Salmonella enterica subsp. enterica serovar Typhimurium str. 798cytochrome c-type protein5e-52205
NC_011080:3976441:3993936399393639951201185Salmonella enterica subsp. enterica serovar Newport str. SL254,trimethylamine-N-oxide reductase c-type cytochrome TorC5e-52205
NC_011274:3799696:3799696379969638008801185Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91cytochrome c-type protein4e-52205
NC_004631:3809678:3809678380967838108621185Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein5e-51202
NC_011601:1077548:1090841109084110920131173Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometrimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit3e-51202
NC_016832:3798475:3798475379847537996591185Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cytochrome c-type protein torC2e-50200
NC_011294:2334979:234777823477782348380603Salmonella enterica subsp. enterica serovar Enteritidis strcytochrome c-type protein NapC4e-36152
NC_011205:2462025:247484524748452475447603Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853cytochrome c-type protein NapC4e-36152
NC_011147:682897:691017691017691619603Salmonella enterica subsp. enterica serovar Paratyphi A strcytochrome c-type protein NapC4e-36152
NC_011094:2348491:235946123594612360063603Salmonella enterica subsp. enterica serovar Schwarzengrund strcytochrome c-type protein NapC4e-36152
NC_011083:2375061:240126324012632401865603Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,cytochrome c-type protein napC4e-36152
NC_011149:2294500:230516623051662305768603Salmonella enterica subsp. enterica serovar Agona str. SL483,cytochrome c-type protein napC4e-36152
NC_003197:2327474:235368323536832354285603Salmonella typhimurium LT2, complete genomeperiplasmic nitrate reductase4e-36152
NC_011080:2342672:235545523554552356057603Salmonella enterica subsp. enterica serovar Newport str. SL254,cytochrome c-type protein napC4e-36152
NC_006905:2355290:236796723679672368569603Salmonella enterica subsp. enterica serovar Choleraesuis strperiplasmic nitrate reductase, cytochrome c-type protein4e-36152
NC_006511:682863:690983690983691585603Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCcytochrome c-type protein NapC4e-36152
NC_012125:1517925:152604515260451526647603Salmonella enterica subsp. enterica serovar Paratyphi C straincytochrome c-type protein NapC4e-36152
NC_016810:2325190:235139923513992352001603Salmonella enterica subsp. enterica serovar Typhimurium strcytochrome c-type protein NapC4e-36152
NC_016832:687000:693431693431694033603Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Cytochrome c-type protein NapC3e-36152
NC_004631:685357:693477693477694079603Salmonella enterica subsp. enterica serovar Typhi Ty2, completecytochrome c-type protein NapC3e-36152
NC_003198:2297837:231063423106342311236603Salmonella enterica subsp. enterica serovar Typhi str. CT18,cytochrome c-type protein NapC3e-36152
NC_011274:2325840:233864723386472339249603Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91cytochrome c-type protein NapC4e-36152
NC_017046:2324554:235076323507632351365603Salmonella enterica subsp. enterica serovar Typhimurium str. 798cytochrome c-type protein NapC4e-36152
NC_016863:2324293:235342823534282354030603Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1cytochrome c-type protein NapC4e-36152
NC_016860:2323017:234922623492262349828603Salmonella enterica subsp. enterica serovar Typhimurium strcytochrome c-type protein NapC4e-36152
NC_016857:2325190:235139923513992352001603Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74cytochrome c-type protein NapC4e-36152
NC_016856:2379027:240523624052362405838603Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Scytochrome c-type protein NapC4e-36152
NC_016831:687549:695643695643696245603Salmonella enterica subsp. enterica serovar Gallinarum/pullorumcytochrome c-type protein NapC4e-36152
NC_010067:632683:641974641974642576603Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein9e-36151
NC_010102:683444:691538691538692140603Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-35150
NC_015761:2227500:223646822364682237070603Salmonella bongori NCTC 12419, complete genomecytochrome c-type protein NapC1e-35150
NC_010634:3155741:317603531760353176634600Yersinia pseudotuberculosis PB1/+, complete genomeNapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome3e-35149
NC_006155:3237990:325852432585243259123600Yersinia pseudotuberculosis IP 32953, complete genomecytochrome C-type protein NapC3e-35149
NC_014837:3126543:314063631406363141220585Pantoea sp. At-9b chromosome, complete genomeperiplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family8e-35148
NC_008321:2190000:219347121934712194058588Shewanella sp. MR-4, complete genomeperiplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family3e-34146
NC_013421:2972269:297674629767462977348603Pectobacterium wasabiae WPP163, complete genomeperiplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family1e-33144
NC_016616:134449:146461146461147036576Dechlorosoma suillum PS chromosome, complete genomenitrate/TMAO reductase, membrane-bound tetraheme cytochrome c subunit8e-34144
NC_007298:2769525:277674427767442777319576Dechloromonas aromatica RCB, complete genomeNapC/NirT cytochrome c, N-terminal2e-33143
NC_007645:3434795:345284934528493453442594Hahella chejuensis KCTC 2396, complete genomeNitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit1e-31137
NC_010511:1122529:113388911338891134503615Methylobacterium sp. 4-46 chromosome, complete genomeNapC/NirT cytochrome c domain-containing protein6e-31135
NC_009430:16500:169521695217620669Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, completehypothetical protein7e-31134
NC_017075:2293209:230930223093022309898597Rubrivivax gelatinosus IL144, complete genomeNapC/NirT cytochrome c domain protein2e-29130
NC_004757:1021355:104445910444591045160702Nitrosomonas europaea ATCC 19718, complete genomeputative tetraheme c-cytochrome8e-1891.7
NC_009850:1131492:114350811435081144101594Arcobacter butzleri RM4018, complete genomecytochrome c-type protein TorC1e-1790.9
NC_015222:1749553:175846517584651759154690Nitrosomonas sp. AL212 chromosome, complete genomeNapC/NirT cytochrome c domain-containing protein1e-1481.3
NC_015222:2089767:210473521047352105424690Nitrosomonas sp. AL212 chromosome, complete genomeNapC/NirT cytochrome c domain-containing protein1e-1481.3
NC_015731:867377:908518908518909192675Nitrosomonas sp. Is79A3 chromosome, complete genomeNapC/NirT cytochrome c domain-containing protein1e-1377.8
NC_015731:867377:886369886369887043675Nitrosomonas sp. Is79A3 chromosome, complete genomeNapC/NirT cytochrome c domain-containing protein2e-1377
NC_014761:2189500:221579022157902216521732Oceanithermus profundus DSM 14977 chromosome, complete genomecytochrome c-type protein torc3e-1376.3
NC_003198:3824187:3824187382418738253721186Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-0963.9
NC_009715:905134:906427906427907005579Campylobacter curvus 525.92 chromosome, complete genomeputative cytochrome C-type heme-binding periplasmic protein8e-0961.6
NC_020409:1328875:133022613302261330813588Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completecytochrome c nitrite reductase, small subuinit (4 hemes)4e-0859.3
NC_009715:905134:912383912383912979597Campylobacter curvus 525.92 chromosome, complete genomeputative cytochrome C-type heme-binding periplasmic protein5e-0858.9
NC_012039:1399699:140366714036671404245579Campylobacter lari RM2100, complete genometrimethylamine N-oxide reductase, cytochrome c-type subunit4e-0755.8