Pre_GI: BLASTP Hits

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Query: NC_014328:3823902:3838225 Clostridium ljungdahlii ATCC 49587 chromosome, complete genome

Start: 3838225, End: 3838944, Length: 720

Host Lineage: Clostridium ljungdahlii; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain was isolated from chicken yard waste and is studied for its ability to produce ethanol. This acetogenic species has the ability to convert carbon monoxide into ethanol. The yield of this process has been increased substantially in the laboratory by using a dual-fermentation system. A methanogenic conversion step has also been designed for utilizing some of the waste products generated during the synthetic process.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012984:3077004:308966030896603090403744Lactobacillus plantarum JDM1, complete genomeresponse regulator; accesory gene regulator protein A1e-42172
NC_002976:1540794:156046715604671561138672Staphylococcus epidermidis RP62A, complete genomeaccessory gene regulator protein A3e-41168
NC_009785:387910:407897407897408631735Streptococcus gordonii str. Challis substr. CH1, complete genomeResponse regulator of the LytR/AlgR family2e-28126
NC_020207:2240115:225031622503162251068753Enterococcus faecium NRRL B-2354, complete genomeResponse regulator of the LytR, AlgR family7e-24110
NC_014554:337268:366348366348367091744Lactobacillus plantarum subsp. plantarum ST-III chromosome,response regulator PlnD, repressor3e-21102
NC_004567:343500:373896373896374639744Lactobacillus plantarum WCFS1, complete genomeresponse regulator PlnD, repressor3e-21102
NC_004567:343500:373034373034373777744Lactobacillus plantarum WCFS1, complete genomeresponse regulator PlnC, activator7e-21100
NC_014554:337268:365486365486366229744Lactobacillus plantarum subsp. plantarum ST-III chromosome,response regulator PlnC, activator7e-21100
NC_012004:470492:477357477357478097741Streptococcus uberis 0140J, complete genomeresponse regulator protein6e-21100
NC_014393:1022843:104502710450271045773747Clostridium cellulovorans 743B chromosome, complete genometwo component transcriptional regulator, LytTR family3e-1995.5
NC_013199:2426686:243414124341412434917777Lactobacillus rhamnosus Lc 705, complete genomeResponse regulator of the LytR/AlgR family2e-1789.4
NC_013198:2458080:246553224655322466320789Lactobacillus rhamnosus GG, complete genomeresponse regulator, LytR/AlgR family2e-1789.4
NC_014334:2307950:231601723160172316823807Lactobacillus casei str. Zhang chromosome, complete genomeresponse regulator of the LytR/AlgR family3e-1685.5
NC_008526:2373190:238419923841992385005807Lactobacillus casei ATCC 334, complete genomeResponse regulator of the LytR/AlgR family4e-1685.1
NC_010999:2516000:252425525242552525061807Lactobacillus casei, complete genomeResponse regulator4e-1685.1
NC_008261:576923:593925593925594641717Clostridium perfringens ATCC 13124, complete genomeDNA-binding response regulator3e-1375.5
NC_016048:308342:328892328892329599708Oscillibacter valericigenes Sjm18-20, complete genomeputative two-component response regulator5e-1271.6
NC_013174:501326:500595500595501329735Jonesia denitrificans DSM 20603, complete genometwo component transcriptional regulator, LytTR family1e-1170.1
NC_015589:3852217:386341738634173864118702Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver3e-1168.9
NC_009828:600349:601856601856602527672Thermotoga lettingae TMO, complete genometwo component transcriptional regulator, LytTR family1e-1066.6
NC_010658:2529033:255507825550782555812735Shigella boydii CDC 3083-94, complete genomeresponse regulator6e-1064.3
NC_008258:2473000:249696424969642497698735Shigella flexneri 5 str. 8401, complete genomeputative 2-component transcriptional regulator6e-1064.3
NC_004337:2478461:250322425032242503958735Shigella flexneri 2a str. 301, complete genomeputative 2-component transcriptional regulator6e-1064.3
CP002516:1419413:142028314202831421017735Escherichia coli KO11, complete genometwo component transcriptional regulator, LytTR family6e-1064.3
NC_013941:2928000:296958729695872970321735Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein6e-1064.3
NC_016822:2678691:270562327056232706357735Shigella sonnei 53G, complete genomeLytTR family two component transcriptional regulator6e-1064.3
NC_016902:1419413:142028314202831421017735Escherichia coli KO11FL chromosome, complete genomeLytTR family two component transcriptional regulator6e-1064.3
NC_009089:1283000:128229312822931283006714Clostridium difficile 630, complete genometwo-component response regulator4e-0962
NC_014933:3715467:371826637182663718967702Bacteroides helcogenes P 36-108 chromosome, complete genometwo component transcriptional regulator, LytTR family5e-0961.6
NC_018704:2417902:242905824290582429768711Amphibacillus xylanus NBRC 15112, complete genomeputative two-component system response regulator6e-0961.2
NC_007644:1638083:165823516582351658972738Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, LytR/AlgR family6e-0961.2
NC_014152:2849991:286797228679722868697726Thermincola sp. JR, complete genometwo component transcriptional regulator, LytTR family6e-0961.2
NC_004668:3053119:306801830680183068746729Enterococcus faecalis V583, complete genomeresponse regulator8e-0960.8
NC_014633:583858:604072604072604797726Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator7e-0960.8
NC_012778:207415:217309217309218022714Eubacterium eligens ATCC 27750, complete genometwo-component system, LytT family, response regulator7e-0960.8
NC_017316:2581781:259771425977142598442729Enterococcus faecalis OG1RF chromosome, complete genomeresponse regulator1e-0860.5
NC_016894:77853:840308403084764735Acetobacterium woodii DSM 1030 chromosome, complete genometwo component transcriptional regulator1e-0860.1
NC_009922:42696:456394563946355717Alkaliphilus oremlandii OhILAs, complete genometwo component transcriptional regulator, LytTR family1e-0860.1
NC_015589:2281054:228878522887852289513729Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeLytTr DNA-binding protein3e-0858.9
NC_015687:1811573:181561018156101816371762Clostridium acetobutylicum DSM 1731 chromosome, complete genomeresponse regulator3e-0858.9
NC_003030:1811820:181401018140101814771762Clostridium acetobutylicum ATCC 824, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)3e-0858.9
NC_017295:1809386:181342318134231814184762Clostridium acetobutylicum EA 2018 chromosome, complete genomeResponse regulator (CheY-like receiver domain and DNA-binding HTH domain)3e-0858.9
NC_014633:837588:857228857228857983756Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceLytTR family two component transcriptional regulator4e-0858.5
NC_016776:3798108:379737437973743798111738Bacteroides fragilis 638R, complete genomeputative two-component system, response regulator1e-0757
NC_006347:3843228:384459438445943845331738Bacteroides fragilis YCH46, complete genometwo-component system response regulator1e-0757
NC_003228:3752035:375130137513013752038738Bacteroides fragilis NCTC 9343, complete genomeputative two-component system, response regulator1e-0756.6
NC_010718:2265447:226544722654472266163717Natranaerobius thermophilus JW/NM-WN-LF, complete genometwo component transcriptional regulator, LytTR family1e-0756.6
NC_002695:2893951:289323528932352893954720Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0756.2
NC_013008:2889743:288902728890272889746720Escherichia coli O157:H7 str. TW14359 chromosome, complete genometwo-component response-regulatory protein YehT2e-0756.2
NC_017025:1735835:174216717421671742898732Flavobacterium indicum GPTSA100-9, complete genomeTwo-component system response regulatory protein, LytTR family2e-0756.2
NC_009616:99647:116610116610117290681Thermosipho melanesiensis BI429 chromosome, complete genomeLytTR family two component transcriptional regulator2e-0756.2
NC_015172:850802:866232866232866960729Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometwo component transcriptional regulator, LytTR family3e-0755.5
NC_011750:919953:938353938353939072720Escherichia coli IAI39 chromosome, complete genomeputative two-component response-regulatory protein YehT5e-0754.7
NC_004663:1499145:151426015142601514958699Bacteroides thetaiotaomicron VPI-5482, complete genometwo-component system response regulator6e-0754.7
NC_006347:2190000:219573921957392196437699Bacteroides fragilis YCH46, complete genometwo-component system response regulator8e-0754.3
NC_003228:2245181:225199322519932252691699Bacteroides fragilis NCTC 9343, complete genomeputative two-component system response regulator8e-0754.3
NC_016776:2237404:224442922444292245127699Bacteroides fragilis 638R, complete genomeputative two-component system response regulator8e-0754.3
NC_019968:1084288:112808911280891128805717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family7e-0754.3
NC_019968:1304450:131481713148171315533717Prevotella dentalis DSM 3688 chromosome 2, complete sequenceresponse regulator of the LytR/AlgR family7e-0754.3
NC_009792:642881:644563644563645282720Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-0652.8
NC_009617:648000:666775666775667533759Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeLytTR family two component transcriptional regulator2e-0652.4
NC_014624:287500:304428304428305174747Eubacterium limosum KIST612 chromosome, complete genomeResponse regulator of the LytR/AlgR family4e-0651.6
NC_014624:3316916:332634833263483326935588Eubacterium limosum KIST612 chromosome, complete genomeLytTR family two component transcriptional regulator5e-0651.6
NC_013316:2033906:207459320745932075183591Clostridium difficile R20291, complete genomehypothetical protein5e-0651.2
NC_015510:1234500:125508212550821255795714Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeLytTR family two component transcriptional regulator5e-0651.2