Pre_GI: BLASTP Hits

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Query: NC_013716:357928:357928 Citrobacter rodentium ICC168, complete genome

Start: 357928, End: 359172, Length: 1245

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015761:299386:2999332999333011771245Salmonella bongori NCTC 12419, complete genomehypothetical protein0802
NC_010498:301000:3010713010713023151245Escherichia coli SMS-3-5, complete genomefermentation-respiration switch protein0789
NC_017328:303987:3039873039873052311245Shigella flexneri 2002017 chromosome, complete genomeesterase frsA0789
NC_007384:307013:3092813092813105251245Shigella sonnei Ss046, complete genomehypothetical protein0788
NC_013361:313540:3158083158083170521245Escherichia coli O26:H11 str. 11368 chromosome, complete genomefermentation/respiration switch protein0787
NC_007946:289425:2894252894252906691245Escherichia coli UTI89, complete genomehypothetical protein YafA0787
NC_008563:287136:2894042894042906481245Escherichia coli APEC O1, complete genomefermentation/respiration switch protein0787
NC_004431:364000:3646553646553658991245Escherichia coli CFT073, complete genomehypothetical protein0785
NC_011745:291422:2914222914222926661245Escherichia coli ED1a chromosome, complete genomefermentation/respiration switch protein0783
NC_014121:1101093:1101093110109311023371245Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completefermentation/respiration switch protein0772
NC_016514:891772:8940548940548952981245Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YafA0770
NC_014618:3700640:3716833371683337180771245Enterobacter cloacae SCF1 chromosome, complete genomefermentation/respiration switch protein0728
NC_020063:3690308:3746198374619837474421245Enterobacteriaceae bacterium strain FGI 57, complete genomedienelactone hydrolase-like enzyme0715
NC_020260:3004500:3020719302071930219661248Cronobacter sakazakii Sp291, complete genomefermentation/respiration switch protein0688
NC_013282:923500:9242269242269255091284Cronobacter turicensis, complete genomeUPF0255 protein CKO_029570679
NC_012917:3684840:3705003370500337062531251Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein7e-170597
NC_004547:3866439:3884432388443238856821251Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-168592
NC_003143:3583468:3587564358756435888111248Yersinia pestis CO92, complete genomehypothetical protein6e-168590
NC_010159:3502350:3506446350644635076931248Yersinia pestis Angola, complete genomeesterase YafA6e-168590
NC_010465:3597000:3600288360028836015351248Yersinia pseudotuberculosis YPIII, complete genomeprotein of unknown function DUF1100 hydrolase family protein6e-168590
NC_008149:1002453:1016770101677010180171248Yersinia pestis Nepal516, complete genomehypothetical protein6e-168590
NC_010634:1056441:1071552107155210727991248Yersinia pseudotuberculosis PB1/+, complete genomeprotein of unknown function DUF1100 hydrolase family protein6e-168590
NC_006155:1074298:1089409108940910906561248Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein6e-168590
NC_005810:754340:7695077695077707541248Yersinia pestis biovar Microtus str. 91001, complete genomefermentation/respiration switch protein6e-168590
NC_008150:3015000:3019242301924230204891248Yersinia pestis Antiqua, complete genomehypothetical protein6e-168590
NC_009381:3228500:3231828323182832330751248Yersinia pestis Pestoides F chromosome, complete genomefermentation/respiration switch protein6e-168590
NC_004088:1075454:1089753108975310910181266Yersinia pestis KIM, complete genomehypothetical protein5e-168590
NC_017265:3375463:3379194337919433804411248Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,fermentation/respiration switch protein6e-168590
NC_017168:2158839:2173156217315621744031248Yersinia pestis A1122 chromosome, complete genomefermentation/respiration switch protein6e-168590
NC_017160:3560153:3564249356424935654961248Yersinia pestis D182038 chromosome, complete genomehypothetical protein6e-168590
NC_017154:3576256:3580352358035235815991248Yersinia pestis D106004 chromosome, complete genomehypothetical protein6e-168590
NC_014029:3633955:3638051363805136392981248Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-168590
NC_009708:3542336:3546432354643235476791248Yersinia pseudotuberculosis IP 31758 chromosome, complete genomefermentation/respiration switch protein6e-168590
NC_020211:996497:99905999905910003061248Serratia marcescens WW4, complete genomefermentation-respiration switch protein3e-157554
NC_013508:876431:8789288789288801931266Edwardsiella tarda EIB202, complete genomefermentation/respiration switch protein2e-155548