Pre_GI: BLASTP Hits

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Query: NC_012917:4328463:4334276 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 4334276, End: 4334908, Length: 633

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016513:689689:706025706025706669645Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completecAMP-regulatory protein4e-102370
NC_013416:386301:402632402632403276645Aggregatibacter actinomycetemcomitans D11S-1, complete genomecyclic nucleotide-binding domain protein4e-102370
NC_012913:2189862:218986221898622190506645Aggregatibacter aphrophilus NJ8700, complete genomecyclic nucleotide-binding domain protein3e-101367
NC_011901:2914000:293527629352762935872597Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completecAMP-regulatory protein3e-65247
NC_007508:570000:586368586368587060693Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeCAP-like protein3e-55214
NC_007086:557789:575713575713576405693Xanthomonas campestris pv. campestris str. 8004, complete genomeCAP-like protein7e-55213
NC_003902:555699:573623573623574315693Xanthomonas campestris pv. campestris str. ATCC 33913, completecAMP-regulatory protein7e-55213
NC_011296:1821244:183697218369721837646675Thermodesulfovibrio yellowstonii DSM 11347, complete genomecatabolite gene activator9e-24110
NC_013510:5499447:550096255009625501648687Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, Crp/Fnr family4e-21101
NC_015588:2939747:294064829406482941325678Isoptericola variabilis 225 chromosome, complete genometranscriptional regulator, Crp/Fnr family4e-21101
NC_013530:3365742:336760333676033368280678Xylanimonas cellulosilytica DSM 15894, complete genometranscriptional regulator, Crp/Fnr family2e-1995.9
NC_008711:3701635:370163537016353702312678Arthrobacter aurescens TC1, complete genomeputative cyclic nucleotide-binding domain2e-1995.5
NC_011899:1926000:193808619380861938745660Halothermothrix orenii H 168, complete genomeputative transcriptional regulator, Crp/Fnr family5e-1994.4
NC_015957:10403997:104039971040399710404671675Streptomyces violaceusniger Tu 4113 chromosome, complete genomeCrp/Fnr family transcriptional regulator1e-1893.2
NC_020126:5470090:549252754925275493210684Myxococcus stipitatus DSM 14675, complete genomeCrp/Fnr family transcriptional regulator4e-1891.3
NC_014209:2257316:228113822811382281815678Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,transcriptional regulator, Crp/Fnr family3e-1788.6
NC_014964:2301835:231894623189462319623678Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completecyclic nucleotide-binding protein4e-1787.8
NC_010321:2319820:233693123369312337608678Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeCrp/FNR family transcriptional regulator4e-1787.8
NC_007759:2179000:219376221937622194511750Syntrophus aciditrophicus SB, complete genomecAMP-dependent transcriptional regulator1e-1583.2
NC_016593:868500:884318884318885004687Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeanaerobic regulatory protein8e-1580.5
NC_020409:437781:497477497477498151675Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTranscriptional regulator, Crp/Fnr family8e-1580.1
NC_007776:2731981:274077127407712741424654Synechococcus sp. JA-2-3B'a(2-13), complete genometranscriptional regulator, Crp/Fnr family1e-1480.1
NC_010424:1563033:156751815675181568225708Candidatus Desulforudis audaxviator MP104C, complete genomeputative transcriptional regulator, Crp/Fnr family1e-1479.7
NC_012660:2431803:244516724451672445844678Pseudomonas fluorescens SBW25 chromosome, complete genomeputative regulatory protein2e-1479
NC_007930:50801:665926659267296705Lactobacillus salivarius subsp. salivarius UCC118 plasmid pMP118,Transcriptional regulator, crp family5e-1477.8
NC_002936:285527:286986286986287729744Dehalococcoides ethenogenes 195, complete genometranscriptional regulator, Crp/Fnr family2e-1375.9
NC_015065:232240:237865237865238641777Acidobacterium sp. MP5ACTX9 plasmid pACIX902, complete sequencetranscriptional regulator, Crp/Fnr family2e-1375.9
NC_009380:3734773:375096037509603751652693Salinispora tropica CNB-440 chromosome, complete genomeCRP/FNR family transcriptional regulator3e-1375.1
NC_008528:331260:344323344323344988666Oenococcus oeni PSU-1, complete genomeCrp-like transcriptional regulator6e-1373.9
NC_014219:1736000:173863617386361739361726Bacillus selenitireducens MLS10 chromosome, complete genometranscriptional regulator, Crp/Fnr family8e-1373.6
NC_015589:814530:835693835693836349657Desulfotomaculum ruminis DSM 2154 chromosome, complete genomecyclic nucleotide-binding protein2e-1272.8
NC_015681:102000:116429116429117118690Thermodesulfatator indicus DSM 15286 chromosome, complete genomeCrp/Fnr family transcriptional regulator2e-1272.4
NC_008593:1917118:193271019327101933390681Clostridium novyi NT, complete genometranscriptional regulator, Crp/Fnr family( include cyclic nucleotide-binding domain)6e-1270.9
NC_015589:870804:886416886416887039624Desulfotomaculum ruminis DSM 2154 chromosome, complete genomecyclic nucleotide-binding protein7e-1270.5
NC_017068:2786391:279035927903592791009651Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative Crp family transcriptional regulator1e-1169.7
NC_012483:483425:523534523534524220687Acidobacterium capsulatum ATCC 51196, complete genometranscriptional regulator, Crp/Fnr family1e-1169.7
NC_008278:1876435:189724418972441897918675Frankia alni ACN14a, complete genomeputative transcriptional regulator with cyclic nucleotide-binding domain (CrP/Fnr-family)3e-1168.2
NC_015499:1640500:164275216427521643495744Thermodesulfobium narugense DSM 14796 chromosome, complete genometranscriptional regulator, Crp/Fnr family5e-1167.8
NC_016052:2335648:234916823491682349875708Tetragenococcus halophilus NBRC 12172, complete genomeFNR-like protein FLP1e-1066.6
NC_015850:1947000:196440519644051965217813Acidithiobacillus caldus SM-1 chromosome, complete genomeCrp/Fnr family transcriptional regulator3e-1065.1
NC_012440:1405879:141651514165151417198684Persephonella marina EX-H1, complete genometranscriptional regulator6e-1064.3
NC_014206:2912945:293092529309252931617693Geobacillus sp. C56-T3 chromosome, complete genomeCrp/Fnr family transcriptional regulator6e-1064.3
NC_007516:2277910:232100323210032321698696Synechococcus sp. CC9605, complete genometranscriptional regulator, Crp/Fnr family7e-1063.9
NC_010610:1649500:166446916644691665119651Lactobacillus fermentum IFO 3956, complete genometranscriptional regulator9e-1063.5
NC_013947:1296877:130631313063131307020708Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, Crp/Fnr family8e-1063.5
NC_016803:2431672:243454424345442435191648Desulfovibrio desulfuricans ND132 chromosome, complete genomeCarD family transcriptional regulator1e-0963.2
NC_014960:1697818:170794217079421708643702Anaerolinea thermophila UNI-1, complete genomeCrp family transcriptional regulator1e-0963.2
NC_011983:1746000:175180917518091752501693Agrobacterium radiobacter K84 chromosome 2, complete genomecyclic nucleotide-binding protein2e-0962.8
NC_011830:3369282:337608233760823376753672Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, Crp/Fnr family2e-0962.4
NC_006576:2423250:242975924297592430574816Synechococcus elongatus PCC 6301, complete genomehypothetical protein2e-0962
NC_016584:85543:9958299582100250669Desulfosporosinus orientis DSM 765 chromosome, complete genomecAMP-binding protein4e-0961.6
NC_007604:1875268:188647718864771887205729Synechococcus elongatus PCC 7942, complete genomecyclic nucleotide-binding domain (cNMP-BD) protein3e-0961.6
NC_014614:1090000:110533311053331106010678Clostridium sticklandii, complete genomeputative CAMP-binding domains-Catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases3e-0961.6
NC_010337:1999405:2015888201588820175731686Heliobacterium modesticaldum Ice1, complete genomecyclic nucleotide-binding transcriptional regulator, putative4e-0961.2
NC_013943:1019213:104091310409131041569657Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeCrp/Fnr family transcriptional regulator6e-0960.8
NC_002967:2656000:265777026577702658429660Treponema denticola ATCC 35405, complete genomecyclic nucleotide-binding protein7e-0960.8
NC_015565:2027279:207093620709362071604669Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeCrp/Fnr family transcriptional regulator1e-0860.1
NC_009075:15017:440874408744842756Burkholderia pseudomallei 668 chromosome II, complete sequencecAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases1e-0860.1
NC_013517:1916020:191990419199041920626723Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, Crp/Fnr family1e-0859.7
NC_018721:943801:964629964629965327699Psychroflexus torquis ATCC 700755 chromosome, complete genometranscriptional regulator, Crp/Fnr family1e-0859.7
NC_009092:2282437:230490623049062305655750Shewanella loihica PV-4, complete genometranscriptional regulator, Crp/Fnr family2e-0859.3
NC_008609:2643000:264311826431182643834717Pelobacter propionicus DSM 2379, complete genometranscriptional regulator, Crp/Fnr family3e-0858.5
NC_014973:1992694:202097520209752021700726Geobacter sp. M18 chromosome, complete genomeCrp/Fnr family transcriptional regulator3e-0858.5
NC_012918:2850755:285603528560352856751717Geobacter sp. M21 chromosome, complete genomeCrp/Fnr family transcriptional regulator3e-0858.5
NC_015731:3658956:367863236786323679384753Nitrosomonas sp. Is79A3 chromosome, complete genomeCrp/Fnr family transcriptional regulator3e-0858.5
NC_009483:2640403:268419626841962684897702Geobacter uraniireducens Rf4 chromosome, complete genomeCRP/FNR family transcriptional regulator5e-0857.8
NC_011146:63912:815978159782259663Geobacter bemidjiensis Bem, complete genometranscriptional regulator, Crp/Fnr family5e-0857.8
NC_007643:578808:581834581834582223390Rhodospirillum rubrum ATCC 11170, complete genomeCyclic nucleotide-binding domain (cNMP-BD) protein5e-0857.8
NC_015757:2844599:286202028620202862670651Sulfobacillus acidophilus TPY chromosome, complete genomeCRP/FNR family transcriptional regulator7e-0857.4
NC_016884:813000:815595815595816245651Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeCarD family transcriptional regulator7e-0857.4
NC_013406:2866000:291198929119892912690702Paenibacillus sp. Y412MC10 chromosome, complete genomeCrp/Fnr family transcriptional regulator7e-0857.4
NC_011894:5056901:510326151032615103977717Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family6e-0857.4
NC_011894:3988500:400338440033844004100717Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family6e-0857.4
NC_012988:4075429:407808040780804078844765Methylobacterium extorquens DM4, complete genomeCrp/Fnr family transcriptional regulator9e-0857
NC_010172:3712000:371216437121643712928765Methylobacterium extorquens PA1, complete genomecyclic nucleotide-binding1e-0756.6
NC_012988:4387735:441080344108034411414612Methylobacterium extorquens DM4, complete genomenitric oxide responsive transcriptional regulator NnrR, Crp/Fnr family1e-0756.6
NC_015436:474710:498940498940499809870Spirochaeta coccoides DSM 17374 chromosome, complete genometranscriptional regulator, Crp/Fnr family1e-0756.6
NC_009328:3241166:326450832645083265143636Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein2e-0756.2
NC_010688:2400471:242659224265922427353762Xanthomonas campestris pv. campestris, complete genomeTranscriptional regulator, Crp/Fnr family1e-0756.2
NC_015580:293803:336293336293336946654Novosphingobium sp. PP1Y, complete genometranscriptional regulator(cAMP-binding)1e-0756.2
NC_009052:2512373:255438425543842555136753Shewanella baltica OS155, complete genomeputative transcriptional regulator, Crp/Fnr family2e-0755.8
NC_012913:772641:781906781906782679774Aggregatibacter aphrophilus NJ8700, complete genometranscriptional activator protein anr2e-0755.5
NC_009380:1885024:189212618921261892797672Salinispora tropica CNB-440 chromosome, complete genomecyclic nucleotide-binding protein2e-0755.5
NC_012796:2683711:269825226982522698719468Desulfovibrio magneticus RS-1, complete genomehypothetical protein2e-0755.5
NC_010003:1242846:124537212453721246034663Petrotoga mobilis SJ95, complete genometranscriptional regulator, Crp/Fnr family3e-0755.5
NC_016001:2980245:300270930027093003308600Flavobacterium branchiophilum, complete genomeputative Crp/Fnr family transcriptional regulator3e-0755.5
NC_014541:2122788:214288821428882143640753Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, Crp/Fnr family3e-0755.1
NC_014973:1071500:107709410770941077963870Geobacter sp. M18 chromosome, complete genomeCrp/Fnr family transcriptional regulator5e-0754.7
NC_014118:1528851:153062115306211531277657Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, Crp/Fnr family4e-0754.7
NC_021150:1965264:197785119778511978585735Azotobacter vinelandii CA6, complete genomeFnr-like negative transcriptional regulator of CydAB6e-0754.3
NC_012560:1965251:197783819778381978572735Azotobacter vinelandii DJ, complete genomeFnr-like negative transcriptional regulator of CydAB6e-0754.3
NC_008825:4025705:403140540314054031923519Methylibium petroleiphilum PM1, complete genomecAMP-dependent protein kinase - catabolite gene activator and regulatory subunit6e-0754.3
NC_006905:1766000:176744717674471768292846Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional regulation of aerobic, anaerobic respiration, osmotic balance (CRP family)6e-0754.3
NC_008027:1847040:187215418721541872888735Pseudomonas entomophila L48, complete genometranscriptional regulator Anr5e-0754.3
NC_020410:3547345:355258035525803553296717Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completetranscriptional regulator (FNR/CAP family)5e-0754.3
NC_019673:7400817:740786074078607408573714Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, Crp/Fnr family7e-0753.9
NC_016863:1711832:171250117125011713295795Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1fumarate/nitrate reduction transcriptional regulator7e-0753.9
NC_011147:1267005:128548912854891286283795Salmonella enterica subsp. enterica serovar Paratyphi A strfumarate/nitrate reduction transcriptional regulator7e-0753.9
NC_006511:1273162:129164612916461292440795Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCfumarate and nitrate reduction regulatory protein7e-0753.9
NC_009792:1345500:136427313642731365103831Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein7e-0753.9
NC_014934:2223822:222875722287572229515759Cellulophaga algicola DSM 14237 chromosome, complete genometranscriptional regulator, crp/fnr family7e-0753.9
NC_008258:1873805:187380518738051874557753Shigella flexneri 5 str. 8401, complete genomeFumarate and nitrate reduction Regulatory protein7e-0753.9
NC_010511:7024412:703564070356407036380741Methylobacterium sp. 4-46 chromosome, complete genomeCrp/FNR family transcriptional regulator7e-0753.9
NC_015761:1630000:164667116466711647465795Salmonella bongori NCTC 12419, complete genomefumarate and nitrate reduction regulatory protein7e-0753.9
NC_011149:1429523:144800414480041448756753Salmonella enterica subsp. enterica serovar Agona str. SL483,fumarate and nitrate reduction regulatory protein7e-0753.9
NC_017046:1709578:171111017111101711862753Salmonella enterica subsp. enterica serovar Typhimurium str. 798fumarate and nitrate reduction regulatory protein7e-0753.9
NC_016860:1752000:175206517520651752817753Salmonella enterica subsp. enterica serovar Typhimurium strfumarate/nitrate reduction transcriptional regulator7e-0753.9
NC_016857:1709695:171122717112271711979753Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74Fumarate and nitrate reduction regulatory protein7e-0753.9
NC_016856:1763640:176435117643511765103753Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sfumarate/nitrate reduction transcriptional regulator7e-0753.9
NC_016810:1709695:171122717112271711979753Salmonella enterica subsp. enterica serovar Typhimurium strfumarate and nitrate reduction regulatory protein7e-0753.9
NC_011094:1726000:172755417275541728306753Salmonella enterica subsp. enterica serovar Schwarzengrund strfumarate/nitrate reduction transcriptional regulator7e-0753.9
NC_003197:1753663:175437417543741755126753Salmonella typhimurium LT2, complete genometranscriptional regulator7e-0753.9
NC_011080:1750000:175072917507291751481753Salmonella enterica subsp. enterica serovar Newport str. SL254,fumarate and nitrate reduction regulatory protein7e-0753.9
NC_016631:3434963:344374734437473444631885Granulicella mallensis MP5ACTX8 chromosome, complete genomeCarD family transcriptional regulator1e-0653.5
NC_010628:6165632:618677061867706187471702Nostoc punctiforme PCC 73102, complete genomecyclic nucleotide-binding protein1e-0653.5
NC_013416:1246880:125844412584441259217774Aggregatibacter actinomycetemcomitans D11S-1, complete genometranscriptional activator protein anr9e-0753.5
NC_016513:1568401:158001815800181580791774Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completefumarate/nitrate reduction transcriptional regulator9e-0753.5
NC_014393:1221000:122334312233431224026684Clostridium cellulovorans 743B chromosome, complete genometranscriptional regulator, Crp/Fnr family1e-0653.1
NC_015510:834064:839203839203839727525Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeputative Crp/Fnr family transcriptional regulator1e-0652.8
NC_011894:7563668:756921275692127569952741Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, Crp/Fnr family2e-0652.8
NC_009467:117812:123843123843124535693Acidiphilium cryptum JF-5 plasmid pACRY01, complete sequenceCRP/FNR family transcriptional regulator2e-0652.8
NC_010524:4644587:464739446473944648125732Leptothrix cholodnii SP-6, complete genomecyclic nucleotide-binding protein2e-0652.8
NC_004631:1623511:162500116250011625795795Salmonella enterica subsp. enterica serovar Typhi Ty2, completefumarate and nitrate reduction regulatory protein2e-0652.4
NC_003198:1336894:135538713553871356181795Salmonella enterica subsp. enterica serovar Typhi str. CT18,fumarate and nitrate reduction regulatory protein2e-0652.4
NC_016631:4472987:449184544918454492537693Granulicella mallensis MP5ACTX8 chromosome, complete genomeCarD family transcriptional regulator2e-0652.4
NC_015711:6522808:654555265455526546022471Myxococcus fulvus HW-1 chromosome, complete genomecyclic nucleotide-binding domain-containing protein2e-0652
NC_016582:10104458:101119501011195010112456507Streptomyces bingchenggensis BCW-1 chromosome, complete genomeCrp family transcriptional regulator3e-0652
NC_008340:1241300:124882812488281249535708Alkalilimnicola ehrlichei MLHE-1, complete genometranscriptional regulator, Crp/Fnr family3e-0652
NC_010510:409469:422448422448423218771Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completetranscriptional regulator, Crp/Fnr family4e-0651.6
NC_007952:444616:451579451579452328750Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, Crp/Fnr family4e-0651.6
NC_007347:1215358:123856512385651239350786Ralstonia eutropha JMP134 chromosome 1, complete sequenceCyclic nucleotide-binding:Bacterial regulatory protein, Crp4e-0651.2
NC_013716:1138441:115186211518621152482621Citrobacter rodentium ICC168, complete genomehypothetical protein4e-0651.2
NC_010337:1:225122512943693Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, crp/fnr family5e-0651.2
NC_012214:1974500:201414020141402014895756Erwinia pyrifoliae Ep1/96, complete genomeFumarate and nitrate reduction regulatory protein6e-0650.8
NC_013517:483531:503838503838504458621Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, Crp/Fnr family6e-0650.8
NC_017515:372487:392257392257392991735Neisseria meningitidis M04-240196 chromosome, complete genomeCarD family transcriptional regulator7e-0650.4
NC_015496:3256372:326119032611903261855666Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genometranscriptional regulator, Crp/Fnr family7e-0650.4
NC_017516:364404:384318384318385052735Neisseria meningitidis H44/76 chromosome, complete genomeCarD family transcriptional regulator8e-0650.4
NC_003112:364869:383368383368384102735Neisseria meningitidis MC58, complete genometranscriptional regulator, Crp/Fnr family8e-0650.4
NC_015638:62454:634036340364074672Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeCrp/Fnr family transcriptional regulator8e-0650.4
NC_011761:1412420:142874814287481429416669Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeCarD family transcriptional regulator9e-0650.4
NC_011206:1293880:131056613105661311234669Acidithiobacillus ferrooxidans ATCC 53993, complete genometranscriptional regulator, Crp/Fnr family9e-0650.4