Pre_GI: BLASTP Hits

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Query: NC_011983:508287:520773 Agrobacterium radiobacter K84 chromosome 2, complete genome

Start: 520773, End: 523097, Length: 2325

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain has been developed for worldwide commercial use to control crown gall. This species is used commercially to control crown gall, a tumorogenic plant disease caused by the ubiquitous soil-borne pathogen Agrobacterium tumefaciens, which affects susceptible woody plants worldwide. The pathogen is responsible for nursery and orchard losses among stone fruit trees, grapes, apples, pears, nut trees, caneberries, clematis, hops, kiwifruit, persimmons, roses and many ornamental annuals, trees and shrubs. Infected plants are usually weakened and unproductive due to their damaged root system.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010162:2406976:2413825241382524162122388Sorangium cellulosum 'So ce 56', complete genomephosphoserine phosphatase0659
NC_013939:1688400:1701781170178117049903210Deferribacter desulfuricans SSM1, complete genomeserine phosphatase4e-29130
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein1e-28129
NC_006138:1571878:1571878157187815739772100Desulfotalea psychrophila LSv54, complete genomesimilar to ICFG protein1e-27125
NC_006576:1743500:1760393176039317617811389Synechococcus elongatus PCC 6301, complete genomehypothetical protein2e-26121
NC_007604:2555000:2555003255500325563911389Synechococcus elongatus PCC 7942, complete genomeserine phosphatase2e-26121
NC_010814:2217153:2238961223896122422093249Geobacter lovleyi SZ, complete genomeputative phytochrome sensor protein1e-25119
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit2e-24114
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein2e-23111
NC_010337:2339056:2351249235124923524331185Heliobacterium modesticaldum Ice1, complete genomeresponse regulator receiver modulated serine phosphatase1e-21105
NC_016751:1700164:1703150170315017045621413Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit2e-20102
NC_008148:1711679:1713663171366317147961134Rubrobacter xylanophilus DSM 9941, complete genomeputative PAS/PAC sensor protein2e-20101
NC_012108:904260:9267529267529284521701Desulfobacterium autotrophicum HRM2, complete genomeRsbP2e-20101
NC_007512:1162949:1181383118138311833561974Pelodictyon luteolum DSM 273, complete genomeserine phosphatase3e-1997.8
NC_007512:944941:9756209756209775511932Pelodictyon luteolum DSM 273, complete genomeserine phosphatase1e-1895.5
NC_014976:2735423:2735423273542327364301008Bacillus subtilis BSn5 chromosome, complete genomeserine phosphatase3e-1894.4
NC_010162:2406976:241723024172302418192963Sorangium cellulosum 'So ce 56', complete genomephosphoserine phosphatase3e-1894.4
NC_019896:3491000:3518845351884535198521008Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSigma factor sig regulation protein RsbU3e-1894.4
NC_016047:637778:6377786377786387851008Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completephosphoserine phosphatase RsbU3e-1894.4
NC_007519:791679:7947047947047962121509Desulfovibrio alaskensis G20 chromosome, complete genomeserine phosphatase4e-1894
NC_017290:1096599:1117259111725911191661908Chlamydophila psittaci 08DC60 chromosome, complete genomeputative regulatory protein2e-1792
NC_016010:637535:6375356375356396432109Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSerine phosphatase RsbU, regulator of sigma subunit2e-1791.7
NC_013223:1763631:1767581176758117688101230Desulfohalobium retbaense DSM 5692, complete genomeputative PAS/PAC sensor protein3e-1791.3
NC_017059:2771085:2818972281897228212362265Rhodospirillum photometricum DSM 122, complete genomeSerine phosphatase RsbU regulator sigma subunit4e-1790.5
NC_000911:1191445:1197262119726211991661905Synechocystis sp. PCC 6803, complete genomeICFG protein2e-1688.6
NC_017039:1192111:1197517119751711994211905Synechocystis sp. PCC 6803 substr. PCC-P, complete genomeICFG protein2e-1688.6
NC_017052:1192099:1197505119750511994091905Synechocystis sp. PCC 6803 substr. PCC-N, complete genomeICFG protein2e-1688.6
NC_017277:1192485:1197262119726211991661905Synechocystis sp. PCC 6803, complete genomeICFG protein2e-1688.6
NC_008011:1394777:1409027140902714110302004Lawsonia intracellularis PHE/MN1-00, complete genomeputative regulator5e-1687
NC_008009:2430509:2437727243772724387521026Acidobacteria bacterium Ellin345, complete genomeserine phosphatase3e-1584.7
NC_012796:3374911:3433254343325434344891236Desulfovibrio magneticus RS-1, complete genomehypothetical protein5e-1583.6
NC_015565:2827444:2832013283201328332181206Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeprotein serine/threonine phosphatase7e-1583.2
NC_010655:1808657:1810066181006618117031638Akkermansia muciniphila ATCC BAA-835, complete genomeputative PAS/PAC sensor protein1e-1482.4
NC_015573:569625:571222571222571938717Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeprotein serine/threonine phosphatase3e-1481.3
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase4e-1480.9
NC_014219:567033:5670335670335680461014Bacillus selenitireducens MLS10 chromosome, complete genomeprotein serine/threonine phosphatase4e-1480.5
NC_010688:673454:6734546734546755142061Xanthomonas campestris pv. campestris, complete genomeadenylate cyclase6e-1480.1
NC_016622:170000:1881271881271893501224Azospirillum lipoferum 4B, complete genomeputative two-component response regulator2e-1378.6
NC_013790:85889:1007111007111025821872Methanobrevibacter ruminantium M1 chromosome, complete genomeserine phosphatase2e-1378.2
NC_017271:4193000:4216781421678142188412061Xanthomonas campestris pv. raphani 756C chromosome, completeIcfG protein3e-1378.2
NC_014377:1512217:151438815143881515113726Thermosediminibacter oceani DSM 16646 chromosome, complete genomeprotein serine/threonine phosphatase5e-1377
NC_006510:1501487:1517620151762015203252706Geobacillus kaustophilus HTA426, complete genomehypothetical protein5e-1377
NC_016816:792460:7969587969587981871230Pantoea ananatis LMG 5342, complete genomeprotein serine/threonine phosphatase8e-1376.3
NC_017955:3670670:3687246368724636883611116Modestobacter marinus, complete genomeSerine phosphatase RsbU, regulator of sigma subunit8e-1376.3
NC_013956:3641368:3666320366632036675491230Pantoea ananatis LMG 20103 chromosome, complete genomehypothetical protein8e-1376.3
NC_014844:3469848:3485824348582434885982775Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein2e-1275.5
NC_003888:8569962:8581406858140685831091704Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-1274.7
NC_007205:60069:7711577115784611347Candidatus Pelagibacter ubique HTCC1062, complete genomeSigma factor sigB regulation protein3e-1274.7
NC_015732:529201:5279475279475292211275Spirochaeta caldaria DSM 7334 chromosome, complete genomeprotein serine/threonine phosphatase5e-1273.6
NC_009633:1058000:1074544107454410762681725Alkaliphilus metalliredigens QYMF chromosome, complete genomestage II sporulation E family protein7e-1273.2
NC_014837:3633378:3654706365470636560161311Pantoea sp. At-9b chromosome, complete genomeprotein serine/threonine phosphatase1e-1172.8
NC_014392:2513529:2513529251352925146261098Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeputative PAS/PAC sensor protein1e-1172.4
NC_006582:883922:8843548843548853701017Bacillus clausii KSM-K16, complete genomeindirect positive regulator of sigma-B activity2e-1171.6
NC_018704:347948:3504003504003514101011Amphibacillus xylanus NBRC 15112, complete genomephosphoserine phosphatase RsbU7e-1170.1
NC_015321:4142843:4160692416069241640033312Fluviicola taffensis DSM 16823 chromosome, complete genomeprotein serine/threonine phosphatase8e-1169.7
NC_013595:8338619:8338619833861983417743156Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein1e-1069.3
NC_020134:2772500:2791407279140727925461140Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative phosphatase1e-1069.3
NC_009664:4423829:4594883459488345960851203Kineococcus radiotolerans SRS30216, complete genomeStage II sporulation E family protein2e-1068.2
NC_016114:4333390:4349517434951743507971281Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePAS/PAC sensor protein2e-1068.2
NC_004193:375416:6539466539466549591014Oceanobacillus iheyensis HTE831, complete genomeindirect positive regulator of sigma-B activity3e-1067.8
NC_021177:7870464:7889172788917278902871116Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase3e-1067.8
NC_007512:1539095:1539095153909515407051611Pelodictyon luteolum DSM 273, complete genomeputative PAS/PAC sensor protein3e-1067.8
NC_009921:6483660:6510476651047665117141239Frankia sp. EAN1pec, complete genomeprotein serine/threonine phosphatase4e-1067.4
NC_014391:621062:6265546265546277471194Micromonospora aurantiaca ATCC 27029 chromosome, complete genomestage II sporulation protein E1e-0966.2
NC_008346:410940:4237164237164267873072Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeputative CheA signal transduction histidine kinases1e-0965.9
NC_021177:7870464:7891941789194178931131173Streptomyces fulvissimus DSM 40593, complete genomeProtein serine/threonine phosphatase1e-0965.9
NC_018750:3661243:3676167367616736773661200Streptomyces venezuelae ATCC 10712, complete genomeSerine phosphatase RsbU, regulator of sigma subunit1e-0965.9
NC_013510:4960500:4961196496119649624131218Thermomonospora curvata DSM 43183, complete genomeprotein serine/threonine phosphatase2e-0965.1
NC_014614:478578:4929924929924946951704Clostridium sticklandii, complete genomeputative Serine phosphatase precursor2e-0965.1
NC_014328:3120145:3134524313452431363651842Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein3e-0964.3
NC_016582:10015558:1002419110024191100262512061Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase4e-0963.9
NC_019673:6394319:6454744645474464562671524Saccharothrix espanaensis DSM 44229 complete genomeResponse regulator receiver modulated serine phosphatase4e-0963.9
NC_010162:1222000:1243753124375312455251773Sorangium cellulosum 'So ce 56', complete genomehypothetical protein4e-0963.9
NC_012483:3144689:3149285314928531508861602Acidobacterium capsulatum ATCC 51196, complete genomeGAF/FHA/SpoE domain protein6e-0963.5
NC_012796:4693500:4710180471018047113341155Desulfovibrio magneticus RS-1, complete genomeresponse regulator receiver protein5e-0963.5
NC_010572:188500:1921121921121935001389Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-0861.2
NC_008752:3217695:3218300321830032195321233Acidovorax avenae subsp. citrulli AAC00-1, complete genomeserine phosphatase4e-0860.8
NC_019757:3869047:3886897388689738885701674Cylindrospermum stagnale PCC 7417, complete genomeserine phosphatase RsbU, regulator of sigma subunit5e-0860.5
NC_015957:336500:3380803380803394861407Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase6e-0860.1
NC_009925:1109770:1125246112524611263731128Acaryochloris marina MBIC11017, complete genometwo-component response regulator, putative7e-0860.1
NC_009767:5464796:5465677546567754677252049Roseiflexus castenholzii DSM 13941, complete genomeintegral membrane sensor signal transduction histidine kinase8e-0859.7
NC_014165:2081914:210025221002522101181930Thermobispora bispora DSM 43833 chromosome, complete genomeprotein serine/threonine phosphatase1e-0759.3
NC_014253:795869:8177868177868199032118Methanohalobium evestigatum Z-7303 chromosome, complete genomeCache sensor-containing methyl-accepting chemotaxis sensory transducer1e-0759.3
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase1e-0759.3
NC_017955:3731480:3784366378436637865642199Modestobacter marinus, complete genomehypothetical protein1e-0759.3
NC_017955:3731480:3749996374999637517651770Modestobacter marinus, complete genomehypothetical protein1e-0758.9
NC_012559:768939:7871377871377896412505Laribacter hongkongensis HLHK9, complete genomePutative PAS/PAC sensor protein2e-0758.5
NC_012121:1578190:1595479159547915964801002Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative sigmaB regulation protein RsbU4e-0757.8
NC_013410:2691437:2693584269358426949061323Fibrobacter succinogenes subsp. succinogenes S85 chromosome,protein serine/threonine phosphatase7e-0756.6
NC_015957:690817:7096307096307108351206Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase1e-0656.2
NC_017955:3670670:3685066368506636871922127Modestobacter marinus, complete genometwo-component PAS/PAC sensor protein1e-0655.8
NC_013887:213699:2302912302912321861896Methanocaldococcus sp. FS406-22 chromosome, complete genomeintegral membrane sensor signal transduction histidine kinase1e-0655.8
NC_017068:1852708:1861069186106918630541986Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative methyl-accepting chemotaxis protein2e-0655.1
NC_010572:4024810:4037560403756040392991740Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein3e-0654.7
NC_013510:1849751:1868469186846918705502082Thermomonospora curvata DSM 43183, complete genomeputative PAS/PAC sensor protein4e-0654.3
NC_010475:2188827:2193624219362421956992076Synechococcus sp. PCC 7002, complete genometwo-component response regulator5e-0653.9
NC_018643:754104:7541047541047561042001Alpha proteobacterium HIMB5 chromosome, complete genomeCHASE2 domain-containing protein,Stage II sporulation protein E (SpoIIE)6e-0653.5
NC_003888:4523500:4526332452633245279901659Streptomyces coelicolor A3(2), complete genomehypothetical protein8e-0653.1
NC_009633:4733678:4755922475592247579071986Alkaliphilus metalliredigens QYMF chromosome, complete genomemethyl-accepting chemotaxis sensory transducer9e-0652.8