Pre_GI Gene

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Host: NC_008148 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008148:1711679 Rubrobacter xylanophilus DSM 9941, complete genome

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
171167917135891911Propionate--CoA ligaseQuickGO ontologyBLASTP
171366317147961134putative PASPAC sensor proteinQuickGO ontologyBLASTP
17147981715175378anti-sigma-factor antagonistQuickGO ontologyBLASTP
171531517158185043-isopropylmalate dehydratase small subunitQuickGO ontologyBLASTP
171581517170891275homoaconitate hydratase family proteinQuickGO ontologyBLASTP
17170701717699630isochorismatase hydrolaseQuickGO ontologyBLASTP
1717696171959418995-oxoprolinase ATP-hydrolyzingQuickGO ontologyBLASTP
1719600172165420555-oxoprolinase ATP-hydrolyzingQuickGO ontologyBLASTP
17216951722588894pyruvate carboxyltransferaseQuickGO ontologyBLASTP
172258817238021215L-carnitine dehydratasebile acid-inducible protein FQuickGO ontologyBLASTP
17238371724115279hypothetical protein
17242501724744495GntR-like proteinQuickGO ontologyBLASTP
172500017265201521AmidaseQuickGO ontologyBLASTP
172657917285371959Carbamoyl-phosphate synthase L chain ATP-binding proteinQuickGO ontologyBLASTP
172862817302351608Propionyl-CoA carboxylaseQuickGO ontologyBLASTP
173023217319621731AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP