Pre_GI Gene

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Host: NC_013410 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013410:2691437 Fibrobacter succinogenes subsp. succinogenes S85 chromosome,

Host Lineage: Fibrobacter succinogenes; Fibrobacter; Fibrobacteraceae; Fibrobacterales; Fibrobacteres; Bacteria

General Information: Temp: Mesophile; Temp: 37C; Habitat: Host. Cellulolytic rumen bacterium. This bacterium is one of the three most predominant cellulolytic organisms in the rumen. Since cellulose is one of the most abundant carbohydrates on the planet, this organism is, therefore, an important part of the global carbon biogeochemical cycle, converting the mass of fixed carbon generated by photosynthetic organisms back to products that eventually end up as carbon dioxide. Increasing cellulose degradation is an important goal in industrial processes. This organism is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and the cellulolytic organisms have devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
26914372691793357histidine triad HIT proteinQuickGO ontologyBLASTP
26918832692788906Lauroylmyristoyl acyltransferase-like proteinQuickGO ontology
26927902693467678hypothetical proteinBLASTP
269358426949061323protein serinethreonine phosphataseQuickGO ontologyBLASTP
26951352695398264hypothetical proteinBLASTP
26954392695693255hypothetical proteinBLASTP
269588226976721791hypothetical proteinBLASTP
269767227001192448hypothetical proteinBLASTP
270011627015641449hypothetical protein
270156627047123147Superfamily I DNA and RNA helicase and helicase subunits-like proteinQuickGO ontologyBLASTP
270470927061541446serinethreonine protein kinaseQuickGO ontologyBLASTP
27061612706886726hypothetical proteinBLASTP
27068892707599711von Willebrand factor type AQuickGO ontologyBLASTP
270779927092171419sigma-54 interacting domain-containing proteinQuickGO ontologyBLASTP
27094342709679246hypothetical proteinBLASTP
27098402710334495hypothetical protein
27103862711051666hypothetical protein
27110872711644558flavin reductase domain-containing FMN-binding proteinQuickGO ontologyBLASTP
27116502712309660HAD-superfamily hydrolaseQuickGO ontologyBLASTP
27123272713103777hypothetical proteinBLASTP
27131832714166984endo-14-beta-xylanaseQuickGO ontologyBLASTP
271450127168942394Tex-like proteinQuickGO ontologyBLASTP