Pre_GI: BLASTP Hits

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Query: NC_010658:3014371:3031259 Shigella boydii CDC 3083-94, complete genome

Start: 3031259, End: 3032569, Length: 1311

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011415:3523364:3523364352336435246741311Escherichia coli SE11 chromosome, complete genomehypothetical protein0745
NC_011748:3608917:3608917360891736102271311Escherichia coli 55989, complete genomehypothetical protein0745
CU928145:3608917:3608917360891736102271311Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein0745
NC_013941:3884725:3884725388472538860351311Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0744
NC_002695:3994970:3994970399497039962801311Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein0744
NC_012947:630757:6508556508556521651311Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein0742
NC_011750:3768692:3768692376869237700021311Escherichia coli IAI39 chromosome, complete genomehypothetical protein0742
NC_011751:3710786:3710786371078637120961311Escherichia coli UMN026 chromosome, complete genomehypothetical protein0739
NC_014618:586240:6143916143916157011311Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein2e-162572
NC_021066:3703725:3711465371146537127751311Raoultella ornithinolytica B6, complete genomehypothetical protein2e-126452
NC_015873:380485:4054994054994068181320Megasphaera elsdenii DSM 20460, complete genomeUPF0597 protein HMPREF0889_14068e-95347
NC_014933:3942156:3962382396238239636651284Bacteroides helcogenes P 36-108 chromosome, complete genomeinner membrane protein1e-77290
NC_012779:2957000:2971262297126229725571296Edwardsiella ictaluri 93-146, complete genomehypothetical protein3e-77289
NC_014364:2904443:2907783290778329090841302Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeprotein of unknown function DUF10632e-74280
NC_015311:365007:3802283802283815171290Prevotella denticola F0289 chromosome, complete genomehypothetical protein2e-65250
NC_003366:981105:9901919901919914741284Clostridium perfringens str. 13, complete genomehypothetical protein2e-60233
NC_008262:904000:9168959168959181781284Clostridium perfringens SM101, complete genomehypothetical protein2e-60233
NC_018515:4196409:4206266420626642075731308Desulfosporosinus meridiei DSM 13257 chromosome, complete genomehypothetical protein2e-55217
NC_009089:3782000:3783072378307237843551284Clostridium difficile 630, complete genomehypothetical protein3e-53209
NC_018870:2479114:2486924248692424882431320Thermacetogenium phaeum DSM 12270 chromosome, complete genomeserine dehydratase-like, subunit alpha3e-46186
NC_009495:2085000:2094992209499220962841293Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein1e-45184
NC_009697:2012500:2023633202363320249251293Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein1e-45184
NC_009698:2012500:2023850202385020251421293Clostridium botulinum A str. Hall chromosome, complete genomehypothetical protein1e-45184
NC_012563:2230403:2241701224170122429901290Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein1e-45184
NC_012658:2138791:2149723214972321510121290Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein9e-46184
NC_017297:2143000:2153431215343121547231293Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein4e-45182
NC_009699:2142177:2153332215333221546241293Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein4e-45182
NC_010516:2093901:2103098210309821043901293Clostridium botulinum B1 str. Okra, complete genomehypothetical protein4e-45182
NC_016630:1610723:1621430162143016226651236Filifactor alocis ATCC 35896 chromosome, complete genomeinner membrane protein4e-44179
NC_015500:159199:1626371626371639261290Treponema brennaborense DSM 12168 chromosome, complete genomeUPF0597 protein yhaM1e-39164
NC_012785:638000:6431456431456444131269Kosmotoga olearia TBF 19.5.1, complete genomeprotein of unknown function DUF10632e-36153
NC_016077:2044876:2048537204853720498771341Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein1e-35150
NC_016048:4163225:4166769416676941680461278Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein7e-34145