Pre_GI: BLASTP Hits

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Query: NC_010658:1593137:1609414 Shigella boydii CDC 3083-94, complete genome

Start: 1609414, End: 1609809, Length: 396

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:1579375:1602899160289916083195421Escherichia coli IAI1 chromosome, complete genomeputative lipoprotein/autotransporter domain-containing protein5e-52202
CU928160:1579375:1602899160289916083195421Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein; putative exported protein5e-52202
NC_009800:1589000:1609488160948816149085421Escherichia coli HS, complete genome5e-52202
NC_016902:2395578:2395578239557824009985421Escherichia coli KO11FL chromosome, complete genomeouter membrane autotransporter barrel domain-containing protein6e-52202
CP002516:2395578:2395578239557824009985421Escherichia coli KO11, complete genomeouter membrane autotransporter barrel domain protein6e-52202
NC_010468:2345781:2345781234578123512015421Escherichia coli ATCC 8739, complete genomeouter membrane autotransporter barrel domain protein6e-52202
NC_010473:1661000:1680314168031416817141401Escherichia coli str. K-12 substr. DH10B, complete genomehypothetical protein2e-51201
AC_000091:1574000:1594379159437915957791401Escherichia coli W3110 DNA, complete genome2e-51201
NC_000913:1570431:1590689159068915920891401Escherichia coli K12, complete genomeconserved protein, predicted pseudogene2e-51201
NC_012759:1462490:1482748148274814841481401Escherichia coli BW2952 chromosome, complete genomehypothetical protein2e-51201
NC_012967:1546000:1569232156923215706321401Escherichia coli B str. REL606 chromosome, complete genome2e-51201
NC_012947:2228235:2230071223007122316211551Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeouter membrane autotransporter barrel domain protein1e-51201
NC_002655:1966464:1970492197049219718921401Escherichia coli O157:H7 EDL933, complete genomeputative ATP-binding component of a transport system and adhesin protein2e-50197
NC_020063:2230000:2249441224944122548615421Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane autotransporter barrel domain-containing protein4e-49192
CP002185:1681327:1704944170494417102775334Escherichia coli W, complete genomepredicted lipoprotein6e-35145
NC_009425:1:1047210472152564785Enterobacter sp. 638 plasmid pENTE01, complete sequenceouter membrane autotransporter6e-33139
NC_014618:2788533:2800332280033228046994368Enterobacter cloacae SCF1 chromosome, complete genomeouter membrane autotransporter barrel domain-containing protein5e-30129
NC_010498:2555706:2556284255628425641977914Escherichia coli SMS-3-5, complete genomeouter membrane autotransporter3e-29127
NC_004431:2747237:274781527478152748690876Escherichia coli CFT073, complete genomeHypothetical protein ydeU1e-28125
NC_009425:1:787848174740Enterobacter sp. 638 plasmid pENTE01, complete sequenceouter membrane autotransporter1e-28124
NC_013716:2898434:2911789291178929146982910Citrobacter rodentium ICC168, complete genomeputative outer membrane autotransporter8e-28122
NC_011149:3863913:3879256387925638821232868Salmonella enterica subsp. enterica serovar Agona str. SL483,outer membrane autotransporter barrel domain5e-27119
NC_016863:3905875:3916060391606039189272868Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative autotransporter8e-27119
NC_016860:3964000:3977717397771739805242808Salmonella enterica subsp. enterica serovar Typhimurium strputative autotransported protein9e-27118
NC_015663:2807574:2829400282940028361616762Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein2e-26117
NC_012125:3879917:3888198388819838909212724Salmonella enterica subsp. enterica serovar Paratyphi C strainautotransported protein3e-26116
NC_016816:3333000:3357378335737833603352958Pantoea ananatis LMG 5342, complete genomeType V secretory pathway, adhesin AidA2e-25114
NC_012751:1190206:119737711973771197901525Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completetype V secretory pathway, adhesin1e-24111
NC_012751:275336:2828972828972850412145Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completetype V secretory pathway, adhesin2e-24110
NC_011750:1978801:1980462198046219831102649Escherichia coli IAI39 chromosome, complete genomeputative outer membrane autotransporter barrel, putative pectin lyase fold5e-24109
NC_010498:1995500:1999462199946220017832322Escherichia coli SMS-3-5, complete genomeautotransporter (AT) family porin6e-24109
NC_011751:1446073:1466883146688314685321650Escherichia coli UMN026 chromosome, complete genomehypothetical protein2e-23107
NC_011740:1831845:1835772183577218385102739Escherichia fergusonii ATCC 35469, complete genomeconserved hypothetical protein; putative exported protein3e-23107
NC_013361:1634226:1646955164695516492762322Escherichia coli O26:H11 str. 11368 chromosome, complete genomeAidA-I adhesin7e-23105
CU928160:1232510:1246613124661312489342322Escherichia coli IAI1 chromosome, complete genomeputative Outer membrane autotransporter barrel, putative pectin lyase fold6e-23105
NC_011741:1232510:1246613124661312489342322Escherichia coli IAI1 chromosome, complete genomeputative outer membrane autotransporter barrel pectin lyase fold6e-23105
NC_011748:1300863:1315755131575513180642310Escherichia coli 55989, complete genomeputative Outer membrane autotransporter barrel, putative pectin lyase fold6e-23105
CU928145:1300863:1315755131575513180642310Escherichia coli 55989 chromosome, complete genomeputative Outer membrane autotransporter barrel, putative pectin lyase fold6e-23105
NC_011415:1273551:1287653128765312899742322Escherichia coli SE11 chromosome, complete genomeputative autotransporter6e-23105
AP010958:1339263:1353366135336613556872322Escherichia coli O103:H2 str. 12009 DNA, complete genomeAidA-I adhesin-like protein6e-23105
CP002185:1298675:1312778131277813150992322Escherichia coli W, complete genome6e-23105
NC_013353:1339263:1353366135336613556872322Escherichia coli O103:H2 str. 12009, complete genomeAidA-I adhesin-like protein6e-23105
NC_013364:1477248:151671715167171517088372Escherichia coli O111:H- str. 11128, complete genome2e-22103
NC_010658:1193225:120892712089271209847921Shigella boydii CDC 3083-94, complete genome3e-22103
NC_009801:1296488:131199213119921312912921Escherichia coli E24377A, complete genomeporin, autotransporter (AT) family1e-21102
NC_010067:2304313:2326436232643623288502415Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-2098.2
NC_010465:804249:80424980424981718712939Yersinia pseudotuberculosis YPIII, complete genomeouter membrane autotransporter barrel domain protein6e-2096.3
NC_008253:1228485:124290112429011243428528Escherichia coli 536, complete genomepart of hypothetical protein b1170 (putative autotransporter)5e-2096.3
NC_011745:1287714:130223113022311302758528Escherichia coli ED1a chromosome, complete genomehypothetical protein6e-2095.9
NC_011742:1221416:123717112371711237698528Escherichia coli S88 chromosome, complete genomehypothetical protein1e-1995.1
NC_008563:1217804:123355912335591234086528Escherichia coli APEC O1, complete genomehypothetical protein1e-1995.1
NC_007946:1280508:129515112951511295678528Escherichia coli UTI89, complete genomehypothetical protein1e-1995.1
NC_004431:1443968:145971614597161460243528Escherichia coli CFT073, complete genomehypothetical protein1e-1995.1
NC_008149:3648139:36716853671685368280211118Yersinia pestis Nepal516, complete genomeautotransporter protein2e-1994.4
NC_017154:848500:87203687203688315311118Yersinia pestis D106004 chromosome, complete genomeputative autotransporter protein2e-1994.4
NC_017168:4509918:45280984528098453921511118Yersinia pestis A1122 chromosome, complete genomeputative autotransporter protein2e-1994.4
NC_008150:3711953:37119533711953372307011118Yersinia pestis Antiqua, complete genomeputative autotransporter protein2e-1994.4
NC_012967:3769499:3788241378824137917383498Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein6e-1682.8
NC_012947:44512:5269952699561963498Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeouter membrane autotransporter barrel domain protein6e-1682.8
NC_000913:1188999:1218824121882412214452622Escherichia coli K12, complete genome7e-1372.4
NC_010473:1245284:1259065125906512616862622Escherichia coli str. K-12 substr. DH10B, complete genome7e-1372.4
NC_000913:1188999:1220429122042912214451017Escherichia coli K12, complete genome2e-1270.9
NC_009800:1254409:126977812697781270671894Escherichia coli HS, complete genome3e-1270.5
NC_002655:1966464:1966464196646419704954032Escherichia coli O157:H7 EDL933, complete genomehypothetical protein9e-1165.5
NC_012759:1462490:1484192148419214881693978Escherichia coli BW2952 chromosome, complete genomeputative lipoprotein9e-1165.5
AC_000091:1574000:1595823159582315998003978Escherichia coli W3110 DNA, complete genomepredicted lipoprotein9e-1165.5
NC_000913:1570431:1592133159213315961103978Escherichia coli K12, complete genomepredicted lipoprotein9e-1165.5
NC_010473:1661000:1681758168175816857353978Escherichia coli str. K-12 substr. DH10B, complete genomepredicted lipoprotein9e-1165.5
NC_015224:3892972:3923126392312639244001275Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,type V secretory pathway, adhesin AidA4e-0753.5
NC_015224:3892972:3919019391901939219642946Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative pertactin family virulence factor/autotransporter2e-0651.6