Pre_GI: BLASTP Hits

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Query: NC_010001:1917456:1918294 Clostridium phytofermentans ISDg, complete genome

Start: 1918294, End: 1918998, Length: 705

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator1e-1170.5
NC_011663:4579777:458252545825254583277753Shewanella baltica OS223 chromosome, complete genometranscriptional regulator PdhR3e-1168.9
NC_009665:4675289:468162246816224682374753Shewanella baltica OS185 chromosome, complete genometranscriptional regulator PdhR3e-1168.9
NC_008321:458811:474586474586475338753Shewanella sp. MR-4, complete genomeregulatory protein GntR, HTH1e-1066.6
NC_012214:897206:915170915170915934765Erwinia pyrifoliae Ep1/96, complete genomePyruvate dehydrogenase complex repressor2e-1065.9
NC_014550:2562053:256446125644612565135675Arthrobacter arilaitensis Re117, complete genomeputative GntR family transcriptional regulator2e-1065.9
NC_013971:817284:839648839648840412765Erwinia amylovora ATCC 49946 chromosome, complete genomepyruvate dehydrogenase complex repressor3e-1065.5
NC_010694:891967:909868909868910632765Erwinia tasmaniensis, complete genomePyruvate dehydrogenase complex repressor6e-1064.3
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family9e-1063.9
NC_014364:2751662:275653427565342757214681Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein8e-1063.9
NC_008148:583030:583030583030583788759Rubrobacter xylanophilus DSM 9941, complete genomeGntR-like protein8e-1063.9
NC_015594:332432:349319349319350053735Sphingobium chlorophenolicum L-1 chromosome chromosome 2, completeGntR domain-containing protein5e-0961.2
NC_010337:2339056:234209423420942342804711Heliobacterium modesticaldum Ice1, complete genometranscriptional regulator, GntR family7e-0960.8
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator8e-0960.8
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein8e-0960.8
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family9e-0960.5
NC_013166:784339:802018802018802740723Kangiella koreensis DSM 16069, complete genomefatty acid metabolism transcriptional regulator FadR1e-0859.7
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH3e-0858.9
NC_013526:105195:119507119507120259753Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeGntR domain protein3e-0858.5
NC_008699:2260606:228173422817342282474741Nocardioides sp. JS614, complete genomeGntR domain protein5e-0858.2
NC_011365:1865687:188920618892061889964759Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeGntR family transcriptional regulator8e-0857.4
NC_016048:3667890:367938436793843680112729Oscillibacter valericigenes Sjm18-20, complete genomeputative GntR family transcriptional regulator9e-0857.4
NC_004193:2921103:292578529257852926489705Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator9e-0857.4
NC_010125:1011430:101791310179131018671759Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator protein, GntR family1e-0757
NC_015167:313506:317055317055317759705Cellulophaga lytica DSM 7489 chromosome, complete genomeGntR domain-containing protein3e-0755.5
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator3e-0755.5
NC_013173:2261396:226881722688172269518702Desulfomicrobium baculatum DSM 4028, complete genomeGntR domain protein4e-0755.1
NC_009092:2529518:253350725335072534268762Shewanella loihica PV-4, complete genomefatty acid responsive transcription factor FadR domain protein4e-0755.1
NC_015690:3269000:327636032763603277091732Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator5e-0754.7
NC_019673:7797666:780755578075557808226672Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, GntR family6e-0754.7
NC_016935:3819500:382680038268003827531732Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator6e-0754.7
NC_009654:91096:9749297492990691578Marinomonas sp. MWYL1, complete genomeGntR family transcriptional regulator7e-0754.3
NC_014532:1713987:172126917212691721979711Halomonas elongata DSM 2581, complete genomehistidine utilization repressor7e-0754.3
NC_013739:2106662:212626421262642127019756Conexibacter woesei DSM 14684, complete genometranscriptional regulator, GntR family6e-0754.3
NC_014364:394899:435427435427436113687Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein6e-0754.3
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein8e-0753.9
NC_007509:832473:835233835233836093861Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, GntR family9e-0753.9
NC_014966:1668822:169026116902611691052792Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator1e-0653.5
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH2e-0652.8
NC_006905:4638707:466873046687304669503774Salmonella enterica subsp. enterica serovar Choleraesuis strtranscriptional repressor for uxu operon2e-0652.8
NC_015177:915366:934323934323934973651Pedobacter saltans DSM 12145 chromosome, complete genometranscriptional regulator, GntR family2e-0652.8
NC_014364:815346:820369820369821073705Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeGntR domain protein2e-0652.8
NC_017095:119361:147716147716148471756Fervidobacterium pennivorans DSM 9078 chromosome, complete genometranscriptional regulator2e-0652.8
NC_021171:2019755:202131920213192022035717Bacillus sp. 1NLA3E, complete genometranscriptional regulator3e-0652.4
NC_011751:3453683:349481534948153495549735Escherichia coli UMN026 chromosome, complete genometranscriptional regulator3e-0652.4
NC_009828:1530732:153604915360491536768720Thermotoga lettingae TMO, complete genometranscriptional regulator, GntR family3e-0652.4
NC_007963:2777066:277978327797832780505723Chromohalobacter salexigens DSM 3043, complete genomeGntR-like protein4e-0652
NC_012125:4716000:474604547460454746818774Salmonella enterica subsp. enterica serovar Paratyphi C strainDNA-binding transcriptional repressor UxuR5e-0651.6
NC_004631:4687270:470799047079904708763774Salmonella enterica subsp. enterica serovar Typhi Ty2, completeuxu operon transcriptional regulator5e-0651.6
NC_011147:4460726:449757144975714498344774Salmonella enterica subsp. enterica serovar Paratyphi A strDNA-binding transcriptional repressor UxuR5e-0651.6
NC_004088:3186954:320871332087133209513801Yersinia pestis KIM, complete genomeregulator for uxu operon5e-0651.6
NC_017265:2807302:282906228290622829862801Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,DNA-binding transcriptional repressor5e-0651.6
NC_010102:4745949:476664047666404767365726Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-0651.6
NC_011745:4862218:487607548760754876809735Escherichia coli ED1a chromosome, complete genomeTranscriptional regulator4e-0651.6
NC_005810:1413305:143504514350451435806762Yersinia pestis biovar Microtus str. 91001, complete genomeputative transcriptional regulatory protein6e-0651.2
NC_010465:3046904:306868030686803069423744Yersinia pseudotuberculosis YPIII, complete genomeGntR domain protein6e-0651.2
NC_008149:3022970:304472130447213045464744Yersinia pestis Nepal516, complete genometranscriptional regulatory protein6e-0651.2
NC_009708:3035798:305763230576323058375744Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeuxu operon transcriptional regulator6e-0651.2
NC_017160:1299733:132130713213071322050744Yersinia pestis D182038 chromosome, complete genometranscriptional regulator6e-0651.2
NC_010001:3369500:3372248337224833736391392Clostridium phytofermentans ISDg, complete genometranscriptional regulator, GntR family with aminotransferase domain5e-0651.2
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator5e-0651.2
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator8e-0650.8
NC_007929:1290568:129384012938401294538699Lactobacillus salivarius subsp. salivarius UCC118, complete genomeTranscriptional regulator, GntR family8e-0650.8
NC_017208:64500:8740587405888171413Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeGntR family transcriptional regulator9e-0650.4
NC_016027:2512297:252258525225852523292708Gluconacetobacter xylinus NBRC 3288, complete genomeGntR family transcriptional regulator9e-0650.4