Pre_GI: BLASTP Hits

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Query: NC_010001:1745089:1750400 Clostridium phytofermentans ISDg, complete genome

Start: 1750400, End: 1751233, Length: 834

Host Lineage: Lachnoclostridium phytofermentans; Lachnoclostridium; Lachnospiraceae; Clostridiales; Firmicutes; Bacteria

General Information: Isolated from forest soil near the Quabbin Reservoir in Massachusetts, USA. This organism plays an important industrial and ecological role in the anaerobic fermentation of cellulose and produces economically significant levels of acetate and ethanol. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010723:1465097:146844114684411469277837Clostridium botulinum E3 str. Alaska E43, complete genometranscriptional regulatory protein5e-89327
NC_010674:1496500:149822114982211499057837Clostridium botulinum B str. Eklund 17B, complete genometranscriptional regulatory protein6e-88323
NC_009698:2171151:219123921912392192069831Clostridium botulinum A str. Hall chromosome, complete genomeMerR family transcriptional regulator2e-84311
NC_009697:2173000:219102021910202191850831Clostridium botulinum A str. ATCC 19397 chromosome, completeMerR family transcriptional regulator2e-84311
NC_009495:2244774:226237822623782263208831Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeMerR family transcriptional regulator2e-84311
NC_004557:1553000:156846115684611569303843Clostridium tetani E88, complete genometranscriptional regulatory protein2e-79295
NC_016584:4325964:432874343287434329555813Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator4e-1995.1
UCMB5137:3660165:367585036758503676662813Bacillus atrophaeus UCMB-5137putative transcriptional regulator of efflux transporter5e-1581.6
NC_016584:2244966:227049422704942271303810Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator2e-1479.3
NC_010723:1379256:138162413816241382097474Clostridium botulinum E3 str. Alaska E43, complete genomeMerR-family transcriptional regulator7e-1374.7
NC_016633:14000:202342023420998765Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeputative transcriptional regulator2e-1273.2
NC_000964:2702376:271526127152612716082822Bacillus subtilis subsp. subtilis str. 168, complete genometranscriptional regulator8e-1270.9
NC_019896:1483073:150976115097611510582822Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMultidrug-efflux transporter 2 regulator1e-1170.5
NC_009699:1122000:114293611429361143757822Clostridium botulinum F str. Langeland chromosome, complete genomeMerR family transcriptional regulator1e-1170.1
NC_020244:2509000:253068625306862531507822Bacillus subtilis XF-1, complete genometranscriptional regulator2e-1170.1
NC_010001:109893:130233130233131072840Clostridium phytofermentans ISDg, complete genometranscriptional regulator, MerR family2e-1169.7
NC_014976:684000:699900699900700721822Bacillus subtilis BSn5 chromosome, complete genometranscriptional regulator3e-1168.9
NC_017195:2498113:252272125227212523542822Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completemultidrug-efflux transporter 2 regulator4e-1168.6
UCMB5137:2054735:207424220742422075075834Bacillus atrophaeus UCMB-5137BmrR protein1e-1067.4
NC_014479:2505823:252323425232342524088855Bacillus subtilis subsp. spizizenii str. W23 chromosome, completetranscriptional regulator5e-1065.1
NC_014624:2569604:258018525801852580961777Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein8e-1064.3
NC_016047:2658000:268162426816242682445822Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completemultidrug-efflux transporter 2 regulator9e-1064.3
NC_016048:797762:800661800661801476816Oscillibacter valericigenes Sjm18-20, complete genomeputative MerR family transcriptional regulator1e-0963.5
NC_006270:2657726:267236126723612673206846Bacillus licheniformis ATCC 14580, complete genometranscriptional regulator4e-0962.4
NC_006322:2658587:267322126732212674066846Bacillus licheniformis ATCC 14580, complete genomeBmrR4e-0962.4
UCMB5137:1396603:141244914124491413276828Bacillus atrophaeus UCMB-5137transcriptional regulator4e-0962
NC_013757:2630000:263326726332672634079813Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, MerR family5e-0961.6
NC_014639:1358597:138278313827831383610828Bacillus atrophaeus 1942 chromosome, complete genometranscriptional regulator6e-0961.6
CP002207:1358597:138278313827831383610828Bacillus atrophaeus 1942, complete genometranscriptional regulator6e-0961.6
NC_020418:14965:164191641917276858Morganella morganii subsp. morganii KT, complete genomeTranscriptional regulator, MerR family4e-0858.5
NC_011312:3060371:307927830792783079697420Aliivibrio salmonicida LFI1238 chromosome chromosome 1, completetranscriptional regulator6e-0858.2
NC_016047:2658000:268882426888242689669846Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeBmrR protein8e-0857.8
NC_017195:2498113:254309625430962543944849Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeBmrR2e-0757
NC_013406:3672857:371383337138333714651819Paenibacillus sp. Y412MC10 chromosome, complete genomeMerR family transcriptional regulator2e-0756.2
NC_013174:73948:897378973790150414Jonesia denitrificans DSM 20603, complete genometranscriptional regulator, MerR family3e-0755.8
NC_013315:3978495:398005339800533980910858Clostridium difficile CD196 chromosome, complete genomeMerR family transcriptional regulator3e-0755.8
NC_017179:3984000:398807339880733988930858Clostridium difficile BI1, complete genomeMerR family transcriptional regulator3e-0755.8
NC_009089:4177117:418251841825184183375858Clostridium difficile 630, complete genomeMerR-family transcriptional regulator3e-0755.8
NC_011830:3025437:303125230312523032007756Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, MerR family6e-0755.1
NC_007907:1940000:194411719441171944872756Desulfitobacterium hafniense Y51, complete genomehypothetical protein6e-0755.1
NC_013316:4095905:412571441257144126526813Clostridium difficile R20291, complete genomeMerR-family transcriptional regulator1e-0653.9
NC_013315:4015119:404492840449284045740813Clostridium difficile CD196 chromosome, complete genomeMerR family transcriptional regulator1e-0653.9
NC_017179:4023139:405294840529484053760813Clostridium difficile BI1, complete genomeMerR family transcriptional regulator1e-0653.9
NC_012560:5019900:502110350211035021504402Azotobacter vinelandii DJ, complete genometranscriptional regulatory protein, MerR family4e-0652.4
NC_021150:5019887:502109050210905021491402Azotobacter vinelandii CA6, complete genometranscriptional regulatory protein, MerR family4e-0652.4
NC_007645:3478630:349719834971983497557360Hahella chejuensis KCTC 2396, complete genomepredicted transcriptional regulator6e-0651.6
NC_004193:375416:406314406314407078765Oceanobacillus iheyensis HTE831, complete genometranscriptional activator of multidrug-efflux transporters8e-0651.2