Pre_GI: BLASTP Hits

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Query: NC_009664:63230:83202 Kineococcus radiotolerans SRS30216, complete genome

Start: 83202, End: 84113, Length: 912

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015957:7348269:739581873958187396717900Streptomyces violaceusniger Tu 4113 chromosome, complete genomeLysR family transcriptional regulator7e-77287
NC_020211:103371:126887126887127789903Serratia marcescens WW4, complete genomeLysR family transcriptional regulator6e-43174
NC_015138:272500:274941274941275930990Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeLysR family transcriptional regulator4e-40165
NC_011365:1865687:189835118983511899322972Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeLysR family transcriptional regulator5e-39161
NC_020181:1317647:131764713176471318570924Enterobacter aerogenes EA1509E, complete genomeTranscriptional regulator, LysR family2e-38159
NC_011365:1865687:188826518882651889218954Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeLysR family transcriptional regulator2e-35149
NC_010125:1011430:101697210169721017925954Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator, LysR family3e-35149
NC_011283:785973:800657800657801586930Klebsiella pneumoniae 342 chromosome, complete genomeLysR family transcriptional regulator5e-33141
NC_010338:588000:591892591892592821930Caulobacter sp. K31, complete genometranscriptional regulator, LysR family2e-32139
NC_015709:1459838:148508714850871486001915Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeLysR family transcriptional regulator3e-32139
NC_011365:502620:505292505292506218927Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeLysR family transcriptional regulator4e-31135
NC_010125:2295500:229847122984712299397927Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional Regulator, LysR family4e-31135
NC_016027:2512297:2523752252375225248161065Gluconacetobacter xylinus NBRC 3288, complete genomeLysR family transcriptional regulator5e-31135
NC_013592:2338403:235105423510542351965912Dickeya dadantii Ech586, complete genometranscriptional regulator, LysR family3e-28125
NC_010581:2999002:299900229990022999895894Beijerinckia indica subsp. indica ATCC 9039, complete genometranscriptional regulator, LysR family2e-25116
NC_009439:3535152:354860435486043549542939Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator1e-24114
NC_008392:1029134:104404010440401044942903Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, LysR family2e-24113
NC_010557:679656:712468712468713370903Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, LysR family2e-24113
NC_015138:201323:211862211862212773912Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeLysR family transcriptional regulator2e-24113
NC_008752:166877:1820701820701833681299Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, LysR family3e-24112
NC_018691:4619245:462260946226094623520912Alcanivorax dieselolei B5 chromosome, complete genomeTranscriptional regulator, LysR family3e-23109
NC_011000:2732330:279787027978702798769900Burkholderia cenocepacia J2315 chromosome 1, complete sequenceLysR family regulatory protein4e-23108
NC_007511:3512100:352254135225413523473933Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, LysR family3e-22105
NC_009937:311242:314202314202315176975Azorhizobium caulinodans ORS 571, complete genomeputative transcriptional regulator2e-21103
NC_015733:2720183:273520827352082736122915Pseudomonas putida S16 chromosome, complete genomeLysR family transcriptional regulator1e-21103
NC_021066:4177217:418936241893624190264903Raoultella ornithinolytica B6, complete genomeputative transcriptional regulator5e-21102
NC_014641:20103:410434104341975933Achromobacter xylosoxidans A8 plasmid pA81, complete sequenceHTH-type transcriptional activator NahR 31e-20100
NC_008781:2611702:262742326274232628379957Polaromonas naphthalenivorans CJ2, complete genometranscriptional regulator, LysR family2e-20100
NC_006569:370846:381777381777382751975Silicibacter pomeroyi DSS-3 megaplasmid, complete sequencetranscriptional regulator, LysR family2e-2099.8
NC_005140:340000:359000359000359944945Vibrio vulnificus YJ016 chromosome II, complete sequencetranscriptional regulator5e-2098.6
NC_014966:328056:347027347027347971945Vibrio vulnificus MO6-24/O chromosome II, complete sequencelysR-family transcriptional regulator5e-2098.6
NC_004460:1618892:163372816337281634660933Vibrio vulnificus CMCP6 chromosome II, complete sequenceTranscriptional regulator, LysR family6e-2098.2
NC_014641:20103:310553105531963909Achromobacter xylosoxidans A8 plasmid pA81, complete sequencebacterial regulatory helix-turn-helix protein, LysR family protein 2037e-2098.2
NC_012988:5516872:553280755328075533766960Methylobacterium extorquens DM4, complete genomeLysR family transcriptional regulator9e-2097.8
NC_010172:5036385:504634750463475047306960Methylobacterium extorquens PA1, complete genomeLysR substrate-binding1e-1997.1
NC_010943:1332243:133936213393621340264903Stenotrophomonas maltophilia K279a, complete genomeputative LysR family transcriptional regulator3e-1995.9
NC_015379:4249238:426468542646854265602918Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, LysR family6e-1995.1
NC_006371:1411335:144096814409681441873906Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical transcriptional regulator, LysR family8e-1994.7
NC_009436:3807420:381830238183023819228927Enterobacter sp. 638, complete genomeLysR family transcriptional regulator7e-1994.7
NC_020209:1986503:200880320088032009744942Pseudomonas poae RE*1-1-14, complete genomeLysR family transcription regulator protein9e-1994.4
NC_010524:4402478:442545844254584426423966Leptothrix cholodnii SP-6, complete genometranscriptional regulator, LysR family1e-1894
NC_009439:1297851:130384013038401304802963Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator1e-1894
NC_008782:3252092:325901532590153259920906Acidovorax sp. JS42, complete genometranscriptional regulator, LysR family2e-1893.6
NC_012912:4167429:417109541710954172015921Dickeya zeae Ech1591, complete genometranscriptional regulator, LysR family3e-1892.8
NC_015381:1705383:170681117068111707734924Burkholderia gladioli BSR3 chromosome 1, complete sequence6e-1891.7
NC_016830:2642881:264642726464272647344918Pseudomonas fluorescens F113 chromosome, complete genomeLysR family transcriptional regulator1e-1790.9
NC_016830:3230939:325379932537993254713915Pseudomonas fluorescens F113 chromosome, complete genomeprotein MexT1e-1790.9
NC_015379:3736500:373842937384293739343915Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, LysR family1e-1790.5
NC_014217:4550544:458732945873294588243915Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, LysR family2e-1790.1
NC_012724:147454:164392164392165333942Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, LysR family protein4e-1789
NC_015376:903939:913862913862914785924Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator, LysR family4e-1788.6
NC_010623:1961685:196825519682551969184930Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, LysR family7e-1788.2
NC_015424:2316228:231775323177532318688936Aeromonas veronii B565 chromosome, complete genomeLysR family transcriptional regulator8e-1787.8
NC_008314:2611873:262641726264172627310894Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator, LysR-family1e-1687.4
NC_015514:3307199:331702833170283317954927Cellulomonas fimi ATCC 484 chromosome, complete genomeLysR family transcriptional regulator2e-1686.7
NC_008786:5128363:513497951349795135926948Verminephrobacter eiseniae EF01-2, complete genometranscriptional regulator, LysR family2e-1686.7
NC_018678:87064:107354107354108277924Alteromonas macleodii str. 'English Channel 673' chromosome,LysR family transcriptional regulator2e-1686.3
NC_008061:2368517:239821323982132399139927Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, LysR family4e-1685.9
NC_015727:1357095:137833313783331379250918Cupriavidus necator N-1 plasmid BB1p, complete sequenceLysR family transcriptional regulator3e-1685.9
NC_017986:5833819:583514258351425836062921Pseudomonas putida ND6 chromosome, complete genomeNahR3e-1685.9
NC_010505:2530476:2551319255131925523201002Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, LysR family4e-1685.5
NC_015138:3160764:316968131696813170574894Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeLysR family transcriptional regulator5e-1685.5
NC_015711:3546500:356156035615603562501942Myxococcus fulvus HW-1 chromosome, complete genomeLysR family transcripitonal regulator6e-1685.1
NC_009439:2427120:243460724346072435509903Pseudomonas mendocina ymp, complete genomeLysR family transcriptional regulator9e-1684.3
NC_007953:938346:945917945917946852936Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, LysR family1e-1584
NC_007952:3196085:322589732258973226814918Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, LysR family2e-1583.6
NC_014013:112008:129080129080130036957Sphingobium japonicum UT26S chromosome 2, complete genomeLysR-family transcriptional regulator2e-1583.6
NC_010505:5035668:504944150494415050385945Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, LysR family2e-1583.6
NC_015376:2241000:225434222543422255334993Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator MexT1e-1583.6
NC_003296:262118:276258276258277172915Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE TRANSCRIPTION REGULATOR PROTEIN1e-1583.6
NC_014121:2090630:210224621022462103172927Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completebacterial regulatory protein, LysR2e-1583.2
NC_011184:597496:615775615775616707933Vibrio fischeri MJ11 chromosome I, complete sequencetranscriptional regulator, LysR family2e-1583.2
NC_007511:3512100:353444735344473535373927Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, LysR family5e-1582
NC_011000:3362382:337903133790313379969939Burkholderia cenocepacia J2315 chromosome 1, complete sequenceLysR family regulatory protein8e-1581.3
NC_015514:3351052:335105233510523351984933Cellulomonas fimi ATCC 484 chromosome, complete genomeLysR family transcriptional regulator7e-1581.3
NC_011894:4066926:409482740948274095753927Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, LysR family9e-1477.8
NC_014311:3348102:336671533667153367680966Ralstonia solanacearum PSI07 chromosome, complete genomeHTH-type transcriptional regulator syrM 11e-1377.4
NC_016830:1645879:166625916662591667191933Pseudomonas fluorescens F113 chromosome, complete genomeLysR family transcriptional regulator2e-1377
NC_019973:5989816:599273559927355993718984Mesorhizobium australicum WSM2073, complete genometranscriptional regulator2e-1377
NC_014923:6060859:606377860637786064761984Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeLysR substrate-binding protein2e-1377
NC_015675:6615245:661844666184466619429984Mesorhizobium opportunistum WSM2075 chromosome, complete genomeLysR family transcriptional regulator2e-1377
NC_015730:3662934:366653636665363667375840Roseobacter litoralis Och 149 chromosome, complete genomeHTH-type LysR family transcriptional regulator2e-1376.6
NC_007645:3756654:375780337578033758747945Hahella chejuensis KCTC 2396, complete genomeTranscriptional regulator3e-1376.3
NC_009524:861500:878447878447879355909Psychrobacter sp. PRwf-1 chromosome, complete genomeLysR family transcriptional regulator3e-1375.9
NC_013446:2130021:214234221423422143295954Comamonas testosteroni CNB-2, complete genometranscriptional regulator, LysR family4e-1375.9
NC_010511:4258000:427139842713984272324927Methylobacterium sp. 4-46 chromosome, complete genomeLysR family transcriptional regulator5e-1375.1
NC_013446:2919005:293064129306412931594954Comamonas testosteroni CNB-2, complete genometranscriptional regulator, LysR family5e-1375.1
NC_014012:1421979:142218014221801423097918Shewanella violacea DSS12, complete genometranscriptional regulator, LysR family1e-1274.3
NC_008392:1029134:106160010616001062565966Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, LysR family1e-1273.9
NC_014623:1883259:189844618984461899354909Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeLysR family transcriptional regulator1e-1273.9
NC_002947:4167500:417027541702754171180906Pseudomonas putida KT2440, complete genometranscriptional regulator, LysR family3e-1272.4
NC_015968:2195645:222627322262732227205933Enterobacter asburiae LF7a chromosome, complete genomeLysR family transcriptional regulator4e-1272.4
NC_009512:3251545:327571832757183276020303Pseudomonas putida F1, complete genometranscriptional regulator, LysR family4e-1272
NC_008541:2119883:213613321361332137020888Arthrobacter sp. FB24 chromosome 1, complete sequencetranscriptional regulator, LysR family5e-1272
NC_010625:1602191:162819216281921629166975Burkholderia phymatum STM815 plasmid pBPHY01, complete sequencetranscriptional regulator, LysR family5e-1272
NC_007712:3629358:364621536462153646823609Sodalis glossinidius str. 'morsitans', complete genomeputative transcriptional regulator6e-1271.6
NC_009656:4079319:408279240827924083724933Pseudomonas aeruginosa PA7 chromosome, complete genomeLysR family transcriptional regulator8e-1271.2
NC_004463:2158116:218076621807662181758993Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein9e-1271.2
NC_016830:1645879:166486316648631665786924Pseudomonas fluorescens F113 chromosome, complete genomeLysR family transcriptional regulator2e-1170.1
NC_013446:2961647:296904529690452969968924Comamonas testosteroni CNB-2, complete genometranscriptional regulator, LysR family5e-1168.6
NC_018531:1900619:193350719335071934448942Arthrobacter sp. Rue61a chromosome, complete genomeLysR family transcriptional regulator6e-1168.6
NC_016613:2759908:276659327665932767510918Vibrio sp. EJY3 chromosome 1, complete sequenceLysR family transcriptional regulator1e-1067.4
NC_004463:2158116:218239221823922183336945Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein1e-1067.4
NC_012796:3374911:338169533816953382615921Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-1067.4
NC_010529:296500:311314311314312246933Cupriavidus taiwanensis plasmid pRALTA, complete sequenceNodD transcriptional regulator; lysR family8e-1064.7
NC_017986:5467279:547918954791895480121933Pseudomonas putida ND6 chromosome, complete genomeLysR family transcriptional regulator3e-0962.8
NC_016514:1183356:119434011943401195299960Enterobacter cloacae EcWSU1 chromosome, complete genomePCP degradation transcriptional activation protein6e-0961.6
NC_011894:585637:603301603301603588288Methylobacterium nodulans ORS 2060, complete genome8e-0961.2
NC_004129:3452885:348876534887653489682918Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, LysR family9e-0961.2
NC_009512:3068495:307157930715793072511933Pseudomonas putida F1, complete genometranscriptional regulator, LysR family1e-0860.8
NC_015663:3466471:348000034800003480920921Enterobacter aerogenes KCTC 2190 chromosome, complete genomeLysR family transcriptional regulator8e-0858.2
NC_015424:3277292:328098932809893281870882Aeromonas veronii B565 chromosome, complete genomeNodD transcription activator-like protein1e-0757.4
NC_011368:678291:683316683316684248933Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201,LysR family transcriptional regulator2e-0756.6
NC_017249:7993713:809553280955328096425894Bradyrhizobium japonicum USDA 6, complete genometranscriptional regulator4e-0755.8
NC_020126:9938287:994969299496929950684993Myxococcus stipitatus DSM 14675, complete genomeLysR family transcriptional regulator8e-0754.7
NC_009431:40917:4091740917424371521Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, completehypothetical protein7e-0651.6