Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:3452885 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
345288534551342250Rhs-family proteinQuickGO ontologyBLASTP
345559734574351839sulfate transporterQuickGO ontologyBLASTP
34575083458167660hypothetical proteinBLASTP
34585063459366861homolog of eukaryotic DNA ligase IIIQuickGO ontologyBLASTP
345938134605261146hypothetical proteinBLASTP
346194334631661224site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
346316634647101545site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
346470334670092307hypothetical proteinBLASTP
34670023467466465hypothetical proteinBLASTP
346795634691401185DNA-cytosine methyltransferaseQuickGO ontologyBLASTP
346913734716922556hypothetical proteinBLASTP
347170734738452139hypothetical proteinBLASTP
347385434797005847helicaseQuickGO ontologyBLASTP
34810513481650600hypothetical proteinBLASTP
34816993482532834enoyl-CoA hydrataseQuickGO ontologyBLASTP
348271134837991089choloylglycine hydrolase family proteinQuickGO ontologyBLASTP
34838803484377498protein activator putativeQuickGO ontology
34847073485513807transcriptional regulator AraC familyQuickGO ontologyBLASTP
34855953486233639transporter LysE familyQuickGO ontologyBLASTP
34863923486808417hydrolase NUDIX familyQuickGO ontologyBLASTP
34869443487549606SCO1SenC family proteinQuickGO ontologyBLASTP
34875493488028480Protein of unknown function DUF461 familyQuickGO ontologyBLASTP
34880703488693624methyltransferase putativeQuickGO ontologyBLASTP
34887653489682918transcriptional regulator LysR familyQuickGO ontologyBLASTP
348984534915361692acyl-CoA synthaseQuickGO ontologyBLASTP
349156834948403273biotin carboxylaseQuickGO ontologyBLASTP