Pre_GI: BLASTP Hits

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Query: NC_009664:4423829:4594883 Kineococcus radiotolerans SRS30216, complete genome

Start: 4594883, End: 4596085, Length: 1203

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:235931:2391562391562402351080Streptosporangium roseum DSM 43021, complete genomeSerine phosphatase RsbU regulator of sigma subunit-like protein4e-37155
NC_015656:4879904:4895368489536848964921125Frankia symbiont of Datisca glomerata chromosome, complete genomeprotein serine/threonine phosphatase1e-35150
NC_015957:336500:3380803380803394861407Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase6e-33142
NC_003888:7028165:7056189705618970572921104Streptomyces coelicolor A3(2), complete genomeintegral membrane protein4e-29129
NC_013131:5226919:5246261524626152474481188Catenulispora acidiphila DSM 44928, complete genomeprotein serine/threonine phosphatase3e-28126
NC_003888:1395319:1402574140257414037371164Streptomyces coelicolor A3(2), complete genomeintegral membrane protein3e-26119
NC_017955:3670670:3687246368724636883611116Modestobacter marinus, complete genomeSerine phosphatase RsbU, regulator of sigma subunit2e-24113
NC_009664:10718:2753127531288021272Kineococcus radiotolerans SRS30216, complete genomeStage II sporulation E family protein3e-1893.2
NC_014391:621062:6265546265546277471194Micromonospora aurantiaca ATCC 27029 chromosome, complete genomestage II sporulation protein E1e-1791.3
NC_016751:1700164:1703150170315017045621413Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit9e-1788.2
NC_008148:1711679:1713663171366317147961134Rubrobacter xylanophilus DSM 9941, complete genomeputative PAS/PAC sensor protein3e-1686.7
NC_018750:3661243:3676167367616736773661200Streptomyces venezuelae ATCC 10712, complete genomeSerine phosphatase RsbU, regulator of sigma subunit3e-1583.2
NC_009921:6483660:6510476651047665117141239Frankia sp. EAN1pec, complete genomeprotein serine/threonine phosphatase8e-1581.6
NC_012483:3144689:3149285314928531508861602Acidobacterium capsulatum ATCC 51196, complete genomeGAF/FHA/SpoE domain protein1e-1481.3
NC_009664:570768:5737565737565755071752Kineococcus radiotolerans SRS30216, complete genomeputative PAS/PAC sensor protein9e-1375.1
NC_013510:1849751:1868469186846918705502082Thermomonospora curvata DSM 43183, complete genomeputative PAS/PAC sensor protein2e-1273.9
NC_015957:690817:7096307096307108351206Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase2e-1273.6
NC_008009:2430509:2437727243772724387521026Acidobacteria bacterium Ellin345, complete genomeserine phosphatase3e-1170.1
NC_013595:8338619:8338619833861983417743156Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein3e-1170.1
NC_006138:1571878:1571878157187815739772100Desulfotalea psychrophila LSv54, complete genomesimilar to ICFG protein5e-1169.3
NC_013510:4960500:4961196496119649624131218Thermomonospora curvata DSM 43183, complete genomeprotein serine/threonine phosphatase5e-1168.9
NC_009664:10718:186341863419341708Kineococcus radiotolerans SRS30216, complete genome6e-1168.9
NC_007512:944941:9756209756209775511932Pelodictyon luteolum DSM 273, complete genomeserine phosphatase7e-1168.6
NC_011983:508287:5207735207735230972325Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein1e-1068.2
NC_014392:2513529:2513529251352925146261098Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomeputative PAS/PAC sensor protein1e-1067.8
NC_007512:1162949:1181383118138311833561974Pelodictyon luteolum DSM 273, complete genomeserine phosphatase2e-1067.4
NC_003888:5114147:511993851199385120483546Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-1067
NC_010162:1222000:1243753124375312455251773Sorangium cellulosum 'So ce 56', complete genomehypothetical protein8e-1065.1
NC_015671:3211972:3231317323131732335992283Cellvibrio gilvus ATCC 13127 chromosome, complete genomeputative PAS/PAC sensor protein6e-0962.4
NC_010337:2339056:2351249235124923524331185Heliobacterium modesticaldum Ice1, complete genomeresponse regulator receiver modulated serine phosphatase1e-0861.2
NC_015953:5444572:5460375546037554629992625Streptomyces sp. SirexAA-E chromosome, complete genomeputative PAS/PAC sensor protein1e-0861.2
NC_021177:7870464:7891941789194178931131173Streptomyces fulvissimus DSM 40593, complete genomeProtein serine/threonine phosphatase2e-0860.8
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase2e-0860.5
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein3e-0860.1
NC_018750:5828000:5841875584187558445202646Streptomyces venezuelae ATCC 10712, complete genomeregulatory protein3e-0859.7
NC_008011:1394777:1409027140902714110302004Lawsonia intracellularis PHE/MN1-00, complete genomeputative regulator4e-0859.7
NC_010814:2217153:2238961223896122422093249Geobacter lovleyi SZ, complete genomeputative phytochrome sensor protein5e-0859.3
NC_017059:2771085:2818972281897228212362265Rhodospirillum photometricum DSM 122, complete genomeSerine phosphatase RsbU regulator sigma subunit5e-0859.3
NC_019673:6394319:6454744645474464562671524Saccharothrix espanaensis DSM 44229 complete genomeResponse regulator receiver modulated serine phosphatase6e-0858.9
NC_016114:4922630:4923950492395049251131164Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeSer/Thr phosphatase8e-0858.5
NC_021177:3867439:3867439386743938691661728Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase9e-0858.5
NC_010572:4585500:4587521458752145893051785Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein9e-0858.5
NC_010572:188500:1921121921121935001389Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein1e-0758.2
NC_013510:3065000:3084646308464630867122067Thermomonospora curvata DSM 43183, complete genomeprotein serine phosphatase with GAF(s) sensor(s)1e-0758.2
NC_007333:1743890:1788670178867017905261857Thermobifida fusca YX, complete genomePAS:Protein phosphatase 2C-like:GAF1e-0758.2
NC_003888:4523500:4526332452633245279901659Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-0757
NC_013757:1438812:1469969146996914722812313Geodermatophilus obscurus DSM 43160, complete genomeputative PAS/PAC sensor protein3e-0757
NC_010655:1808657:1810066181006618117031638Akkermansia muciniphila ATCC BAA-835, complete genomeputative PAS/PAC sensor protein4e-0756.2
NC_016582:7033000:7033222703322270352732052Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase4e-0756.2
NC_003888:8569962:8581406858140685831091704Streptomyces coelicolor A3(2), complete genomehypothetical protein4e-0756.2
NC_014210:4053094:4073747407374740748501104Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein serine/threonine phosphatase5e-0755.8
NC_021177:2451000:2467664246766424688091146Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane protein6e-0755.8
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase8e-0755.5
NC_021177:7870464:7889172788917278902871116Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase2e-0653.9
NC_016943:2054688:2071109207110920728781770Blastococcus saxobsidens DD2, complete genomeSerine phosphatase RsbU, regulator of sigma subunit2e-0653.9
NC_003888:2814360:2850510285051028516971188Streptomyces coelicolor A3(2), complete genomeintegral membrane protein2e-0653.5
NC_013929:6663889:6667381666738166685561176Streptomyces scabiei 87.22 chromosome, complete genomeregulatory protein phosphatase2e-0653.5
NC_013223:1763631:1767581176758117688101230Desulfohalobium retbaense DSM 5692, complete genomeputative PAS/PAC sensor protein5e-0652.8
NC_016622:170000:1881271881271893501224Azospirillum lipoferum 4B, complete genomeputative two-component response regulator5e-0652.8
NC_007519:791679:7947047947047962121509Desulfovibrio alaskensis G20 chromosome, complete genomeserine phosphatase1e-0551.6