Pre_GI Gene

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Host: NC_003888 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_003888:5114147 Streptomyces coelicolor A3(2), complete genome

Host Lineage: Streptomyces coelicolor; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Well-studied antiobiotic-producing bacterium. These bacteria are widely distributed in nature, especially in the soil. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes. This bacterium is a soil-dwelling filamentous organism responsible for producing more than half of the known natural antibiotics. It is a well-studied species of Streptomyces and genetically is the best known representative.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
511414751155681422DEAD-box RNA helicaseQuickGO ontologyBLASTP
51156145115925312hypothetical proteinBLASTP
51159615116320360hypothetical proteinBLASTP
51163725116728357hypothetical proteinBLASTP
51172285117560333hypothetical proteinBLASTP
51176345117876243hypothetical proteinBLASTP
51179285118521594hypothetical proteinBLASTP
51186135119260648hypothetical proteinBLASTP
51193575119617261hypothetical protein
51196505119892243hypothetical protein
51199385120483546hypothetical proteinBLASTP
51205145120981468hypothetical protein
512110951229231815integral membrane proteinQuickGO ontologyBLASTP
512283651238551020IS1652 transposaseQuickGO ontologyBLASTP
512385551266382784Rhs proteinQuickGO ontologyBLASTP
51266595127108450hypothetical protein
5127609512791730930S ribosomal protein S10QuickGO ontologyBLASTP
5127934512857864550S ribosomal protein L3QuickGO ontologyBLASTP
5128587512924666050S ribosomal protein L4QuickGO ontologyBLASTP
5129246512966542050S ribosomal protein L23QuickGO ontologyBLASTP
5129706513054283750S ribosomal protein L2QuickGO ontologyBLASTP
5130555513083628230S ribosomal protein S19QuickGO ontologyBLASTP
5130849513122637850S ribosomal protein L22QuickGO ontologyBLASTP
5131226513205983430S ribosomal protein S3QuickGO ontologyBLASTP
5132065513248442050S ribosomal protein L16QuickGO ontologyBLASTP
5132484513270822550S ribosomal protein L29QuickGO ontologyBLASTP
5132708513299528830S ribosomal protein S17QuickGO ontologyBLASTP
5133103513347136950S ribosomal protein L14QuickGO ontologyBLASTP
5133474513379732450S ribosomal protein L24QuickGO ontologyBLASTP
5133797513435455850S ribosomal protein L5QuickGO ontologyBLASTP
5134360513454518630S ribosomal protein S14QuickGO ontologyBLASTP
5134757513515539930S ribosomal protein S8QuickGO ontologyBLASTP
5135180513571954050S ribosomal protein L6QuickGO ontologyBLASTP
5135723513610638450S ribosomal protein L18QuickGO ontologyBLASTP
5136150513675560630S ribosomal protein S5QuickGO ontologyBLASTP
5136758513694018350S ribosomal protein L30QuickGO ontologyBLASTP
5136943513739845650S ribosomal protein L15QuickGO ontologyBLASTP
513765551389681314preprotein translocase SecYQuickGO ontologyBLASTP
51389685139621654adenylate kinaseQuickGO ontologyBLASTP
51397735140609837methionine aminopeptidaseQuickGO ontologyBLASTP
51407515140972222translational initiation factor IF1QuickGO ontologyBLASTP
5141041514115411450S ribosomal protein L36QuickGO ontologyBLASTP
5141343514172338130S ribosomal protein S13QuickGO ontologyBLASTP
5141791514219540530S ribosomal protein S11QuickGO ontologyBLASTP
514232751433491023DNA-directed RNA polymerase alpha subunitQuickGO ontologyBLASTP
5143544514405050750S ribosomal protein L17QuickGO ontologyBLASTP
51441905145044855tRNA pseudouridine synthase AQuickGO ontologyBLASTP
51450645145963900hypothetical proteinBLASTP
514600851472431236integral membrane proteinQuickGO ontology
5147451514789444450S ribosomal protein L13QuickGO ontologyBLASTP
5147937514844951330S ribosomal protein S9QuickGO ontologyBLASTP
514867451500321359phospho-sugar mutaseQuickGO ontologyBLASTP
51501605151107948integral membrane proteinQuickGO ontologyBLASTP
51511685152157990pantothenate kinaseQuickGO ontologyBLASTP