Pre_GI: BLASTP Hits

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Query: NC_009439:4661102:4667840 Pseudomonas mendocina ymp, complete genome

Start: 4667840, End: 4668328, Length: 489

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008313:2685531:268722326872232687660438Ralstonia eutropha H16 chromosome 1, complete sequenceRibonuclease HI3e-2097.4
NC_015856:1733500:173704417370441737478435Collimonas fungivorans Ter331 chromosome, complete genomeribonuclease HI2e-1788.6
NC_008702:815264:826594826594827043450Azoarcus sp. BH72, complete genomeRnhA1 protein5e-1787
NC_010531:708049:723840723840724304465Polynucleobacter necessarius STIR1, complete genomeribonuclease H7e-1683.2
NC_005085:1269787:132167413216741322117444Chromobacterium violaceum ATCC 12472, complete genomeribonuclease H2e-1581.6
NC_015731:1731896:174266317426631743127465Nitrosomonas sp. Is79A3 chromosome, complete genomeRibonuclease H4e-1580.5
NC_014722:771483:790107790107790556450Burkholderia rhizoxinica HKI 454, complete genomeribonuclease HI6e-1580.1
NC_010524:2117347:213815921381592138641483Leptothrix cholodnii SP-6, complete genomeribonuclease H2e-1478.6
NC_008601:1151653:115122011512201151678459Francisella tularensis subsp. novicida U112, complete genomeribonuclease H7e-1476.3
NC_010677:707881:730309730309730767459Francisella tularensis subsp. mediasiatica FSC147, complete genomeRibonuclease H7e-1476.3
NC_009697:419443:437417437417437866450Clostridium botulinum A str. ATCC 19397 chromosome, completeribonuclease H1e-1375.9
NC_007508:1221500:122480012248001225252453Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeribonuclease H2e-1374.7
NC_014910:1765065:179035317903531790799447Alicycliphilus denitrificans BC chromosome, complete genomeribonuclease h3e-1374.3
NC_012440:373863:382130382130382567438Persephonella marina EX-H1, complete genomeribonuclease HI4e-1373.9
NC_014210:2372813:238997223899722390454483Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,ribonuclease H5e-1373.6
NC_015738:978794:104703510470351047529495Eggerthella sp. YY7918, complete genomehypothetical protein7e-1373.2
NC_009901:2915939:293221229322122932769558Shewanella pealeana ATCC 700345, complete genomeRibonuclease H1e-1272.4
NC_009381:1783886:182737918273791827843465Yersinia pestis Pestoides F chromosome, complete genomeribonuclease H3e-1271.2
NC_008149:3251196:327471332747133275177465Yersinia pestis Nepal516, complete genomeribonuclease HI3e-1271.2
NC_004088:3382148:340564634056463406110465Yersinia pestis KIM, complete genomeribonuclease H3e-1271.2
NC_017518:1701958:170195817019581702395438Neisseria meningitidis NZ-05/33 chromosome, complete genomeribonuclease HI4e-1270.5
NC_008577:2818546:284481028448102845286477Shewanella sp. ANA-3 chromosome 1, complete sequenceribonuclease H5e-1270.1
NC_013173:302375:314342314342314818477Desulfomicrobium baculatum DSM 4028, complete genomeRibonuclease H2e-1168.6
NC_011757:4293000:430359543035954304056462Methylobacterium chloromethanicum CM4, complete genomeRibonuclease H2e-1168.2
NC_004347:2668000:269017526901752690651477Shewanella oneidensis MR-1, complete genomeribonuclease HI4e-1167.4
NC_008321:2569315:258646925864692586945477Shewanella sp. MR-4, complete genomeribonuclease H4e-1167.4
NC_008322:2637646:265481226548122655288477Shewanella sp. MR-7, complete genomeribonuclease H4e-1167.4
NC_002505:514732:530684530684531124441Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeribonuclease H8e-1166.2
NC_012668:83641:892158921589655441Vibrio cholerae MJ-1236 chromosome 1, complete sequenceribonuclease H8e-1166.2
NC_016944:514742:530692530692531132441Vibrio cholerae IEC224 chromosome I, complete sequenceribonuclease H8e-1166.2
NC_011149:309556:312504312504312971468Salmonella enterica subsp. enterica serovar Agona str. SL483,ribonuclease HI1e-1065.5
NC_010981:242500:283821283821284354534Wolbachia pipientis, complete genomeribonuclease h2e-1065.1
NC_016902:3863932:387520938752093875676468Escherichia coli KO11FL chromosome, complete genomeRibonuclease H2e-1064.7
NC_016822:246715:248223248223248690468Shigella sonnei 53G, complete genomeribonuclease H2e-1064.7
CP002516:3863932:387520938752093875676468Escherichia coli KO11, complete genomeRibonuclease H2e-1064.7
CP002185:234719:236227236227236694468Escherichia coli W, complete genomeribonuclease HI, degrades RNA of DNA-RNA hybrids2e-1064.7
NC_014484:591291:606079606079606510432Spirochaeta thermophila DSM 6192 chromosome, complete genomeribonuclease HI3e-1064.3
NC_009720:1248866:127155212715521272289738Xanthobacter autotrophicus Py2, complete genomeribonuclease H1e-0962.4
NC_009937:1733196:174277817427781743338561Azorhizobium caulinodans ORS 571, complete genomeribonuclease H2e-0961.6
NC_014654:1802007:180350918035091804333825Halanaerobium sp. 'sapolanicus' chromosome, complete genomealkylhydroperoxidase like protein, AhpD family3e-0960.8
NC_010172:480000:527114527114527545432Methylobacterium extorquens PA1, complete genomeribonuclease H4e-0960.5
NC_011899:948790:966757966757967566810Halothermothrix orenii H 168, complete genomeRibonuclease H8e-0959.7
NC_018870:2479114:249062624906262491057432Thermacetogenium phaeum DSM 12270 chromosome, complete genomeribonuclease H1e-0858.9
NC_011146:896000:9102609102609116841425Geobacter bemidjiensis Bem, complete genomeribonuclease H1e-0858.5
NC_007644:626992:643380643380643838459Moorella thermoacetica ATCC 39073, complete genomeRibonuclease H2e-0858.2
NC_015500:900807:9278579278579294581602Treponema brennaborense DSM 12168 chromosome, complete genomeRibonuclease H4e-0857.4
NC_012587:1181004:119138711913871192223837Rhizobium sp. NGR234, complete genomeputative ribonuclease HI4e-0857.4
NC_009939:16437:181381813818617480Deinococcus geothermalis DSM 11300 plasmid pDGEO02, completeribonuclease H5e-0857
NC_016838:85487:103228103228103896669Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS1,putative ribonuclease H7e-0856.6
NC_015682:1457004:1462429146242914635501122Thermodesulfobacterium sp. OPB45 chromosome, complete genomeRibonuclease H8e-0856.2
NC_014643:609544:6117676117676130891323Rothia dentocariosa ATCC 17931 chromosome, complete genomeribonuclease HI1e-0755.8
NC_007797:107950:114020114020114472453Anaplasma phagocytophilum HZ, complete genomeribonuclease H12e-0755.1
NC_017098:652681:675999675999676445447Spirochaeta africana DSM 8902 chromosome, complete genomeribonuclease HI3e-0754.7
NC_008609:975867:9943869943869958341449Pelobacter propionicus DSM 2379, complete genomeribonuclease H6e-0753.5
NC_014923:3968000:397125539712553972085831Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeRibonuclease H8e-0753.1
NC_013009:562470:601918601918602373456Neorickettsia risticii str. Illinois, complete genomeRNase H2e-0651.6
NC_011126:555483:591507591507591968462Hydrogenobaculum sp. Y04AAS1, complete genomeRibonuclease H3e-0651.2
NC_011891:2088134:211092421109242111475552Anaeromyxobacter dehalogenans 2CP-1, complete genomeribonuclease H7e-0650.1