Pre_GI: BLASTP Hits

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Query: NC_008261:1048515:1067338 Clostridium perfringens ATCC 13124, complete genome

Start: 1067338, End: 1067811, Length: 474

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1091766:111060111106011111074474Clostridium perfringens str. 13, complete genomeethanolamine utilization protein5e-87319
NC_017179:2067015:208491220849122085385474Clostridium difficile BI1, complete genomeethanolamine utilization protein EutQ2e-70263
NC_013315:2059007:207690420769042077377474Clostridium difficile CD196 chromosome, complete genomeethanolamine/propanediol utilization protein2e-70263
NC_015275:4493500:449381944938194494286468Clostridium lentocellum DSM 5427 chromosome, complete genomeEthanolamine utilization EutQ family protein1e-61235
NC_009922:868262:883139883139883597459Alkaliphilus oremlandii OhILAs, complete genomeEthanolamine utilisation EutQ family protein3e-50197
NC_014376:1586649:160453416045341604992459Clostridium saccharolyticum WM1 chromosome, complete genomeEthanolamine utilization EutQ family protein3e-49193
NC_004557:2289135:229231722923172292781465Clostridium tetani E88, complete genomeethanolamine utilization protein (transcriptional regulator)3e-46183
NC_013517:1055854:113911511391151139576462Sebaldella termitidis ATCC 33386, complete genomeEthanolamine utilisation EutQ family protein1e-45181
NC_013192:63111:666026660267072471Leptotrichia buccalis DSM 1135, complete genomeEthanolamine utilisation EutQ family protein5e-43173
NC_014614:284005:302242302242302691450Clostridium sticklandii, complete genomeEthanolamine utilization protein (Transcriptional regulator)5e-33139
NC_009253:1381401:139450013945001395210711Desulfotomaculum reducens MI-1 chromosome, complete genomeethanolamine utilisation EutQ family protein1e-32138
NC_017297:2288000:229979222997922300454663Clostridium botulinum F str. 230613 chromosome, complete genomeethanolamine utilization protein EutQ-like protein6e-25113
NC_009699:2287893:229968022996802300342663Clostridium botulinum F str. Langeland chromosome, complete genomeethanolamine utilization protein EutQ-like protein6e-25113
NC_009922:2556033:256684125668412567494654Alkaliphilus oremlandii OhILAs, complete genomeEthanolamine utilisation EutQ family protein9e-24109
NC_010674:1496500:151181115118111512473663Clostridium botulinum B str. Eklund 17B, complete genometranscriptional regulator1e-23108
NC_010723:1465097:148202414820241482686663Clostridium botulinum E3 str. Alaska E43, complete genometranscriptional regulator1e-23108
NC_009495:2244774:225045822504582251120663Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeethanolamine utilization protein EutQ-like protein2e-23107
NC_009697:2173000:217910021791002179762663Clostridium botulinum A str. ATCC 19397 chromosome, completeethanolamine utilization protein EutQ-like protein2e-23107
NC_009698:2171151:217931921793192179981663Clostridium botulinum A str. Hall chromosome, complete genomeethanolamine utilization protein EutQ-like protein2e-23107
NC_012563:2384500:239386223938622394524663Clostridium botulinum A2 str. Kyoto, complete genomeethanolamine utilization protein EutQ homolog4e-23106
NC_012658:2295536:230798223079822308644663Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative ethanolamine utilization protein EutQ6e-23106
NC_010001:1745089:176303517630351763664630Clostridium phytofermentans ISDg, complete genomeEthanolamine utilisation EutQ family protein2e-22104
NC_007907:456164:472826472826473476651Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-1787.4
NC_016584:1998000:203396420339642034638675Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein8e-1786.3
NC_016584:1714507:172595817259581726602645Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein1e-1685.9
NC_014328:4316008:432493943249394325628690Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative ethanolamine utilization protein EutQ2e-1684.3
NC_004557:1553000:155866115586611559329669Clostridium tetani E88, complete genometranscriptional regulator3e-1684
NC_018515:1663912:168012016801201680758639Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeethanolamine utilization protein4e-1684
NC_016584:5625975:563298956329895633654666Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine utilization protein8e-1682.8
NC_014328:1286407:129417712941771294848672Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative ethanolamine utilization protein EutQ1e-1582.4
NC_017243:1813158:181766818176681818099432Brachyspira intermedia PWS/A chromosome, complete genomeethanolamine utilization protein EutQ1e-1169.3
NC_016584:1998000:203749520374952037761267Desulfosporosinus orientis DSM 765 chromosome, complete genome8e-1166.2
NC_009633:3933941:394323739432373943917681Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein3e-0650.8