Pre_GI: BLASTP Hits

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Query: NC_007952:1934249:1940023 Burkholderia xenovorans LB400 chromosome 2, complete sequence

Start: 1940023, End: 1941495, Length: 1473

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009708:1522281:1531986153198615334461461Yersinia pseudotuberculosis IP 31758 chromosome, complete genomesolute/sodium symporter (SSS) family protein3e-119429
NC_006155:3212796:3218873321887332203331461Yersinia pseudotuberculosis IP 32953, complete genomeputative sodium:solute symporter (SSS) family protein3e-119429
NC_010465:1550617:1566589156658915680491461Yersinia pseudotuberculosis YPIII, complete genomeNa+/solute symporter6e-119428
NC_008149:1556581:1568822156882215702821461Yersinia pestis Nepal516, complete genomepermease4e-119428
NC_008150:2451872:2459324245932424607841461Yersinia pestis Antiqua, complete genomeputative permease4e-119428
NC_005810:2905362:2912814291281429142741461Yersinia pestis biovar Microtus str. 91001, complete genomeputative permease4e-119428
NC_010159:2878499:2884576288457628860361461Yersinia pestis Angola, complete genometransporter, solute:sodium symporter (SSS) family4e-119428
NC_003143:3346834:3354286335428633557461461Yersinia pestis CO92, complete genomeputative permease4e-119428
NC_004088:1622941:1638899163889916403591461Yersinia pestis KIM, complete genomepermease4e-119428
NC_009381:2373847:2379924237992423813841461Yersinia pestis Pestoides F chromosome, complete genomepermease4e-119428
NC_017265:1346685:1358060135806013595201461Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative permease4e-119428
NC_017168:2394079:2406320240632024077801461Yersinia pestis A1122 chromosome, complete genomeputative permease4e-119428
NC_017160:3326199:3333651333365133351111461Yersinia pestis D182038 chromosome, complete genomeputative permease4e-119428
NC_017154:3344273:3351725335172533531851461Yersinia pestis D106004 chromosome, complete genomeputative permease4e-119428
NC_014029:3401238:3408690340869034101501461Yersinia pestis Z176003 chromosome, complete genomeputative permease4e-119428
NC_010634:3129174:3136626313662631380861461Yersinia pseudotuberculosis PB1/+, complete genomeNa+/solute symporter1e-118427
NC_010623:72500:1002351002351017071473Burkholderia phymatum STM815 chromosome 2, complete sequenceNa+/solute symporter4e-105382
NC_014532:2268078:2289051228905122905681518Halomonas elongata DSM 2581, complete genomeK03307 solute:Na+ symporter, SSS family6e-36152
NC_017093:1411532:1418707141870714203561650Actinoplanes missouriensis 431, complete genomeputative sodium:solute symporter1e-34147
NC_016070:719791:7286717286717301371467Thermoproteus tenax Kra 1, complete genomeNa+/proline symporter2e-31137
NC_007348:2558500:2575474257547425768561383Ralstonia eutropha JMP134 chromosome 2, complete sequenceNa+/solute symporter6e-31135
NC_016109:5455060:5455060545506054566671608Kitasatospora setae KM-6054, complete genomeputative sodium/solute symporter9e-29128
NC_014318:10070730:1009739810097398100990531656Amycolatopsis mediterranei U32 chromosome, complete genomesolute:Na+ symporter, SSS family1e-28127
NC_012588:211633:2317032317032332201518Sulfolobus islandicus M.14.25 chromosome, complete genomeNa+/solute symporter1e-28127
NC_012522:3867167:3886341388634138878251485Rhodococcus opacus B4, complete genomeputative SSS family transporter3e-22107
NC_016027:1647110:1686221168622116876091389Gluconacetobacter xylinus NBRC 3288, complete genomeNa+/solute symporter5e-22106
NC_019908:2496149:2513904251390425154541551Brachyspira pilosicoli P43/6/78 chromosome, complete genomesodium/pantothenate symporter7e-1272.4
NC_014330:697429:7031527031527047021551Brachyspira pilosicoli 95/1000 chromosome, complete genomesodium/pantothenate symporter7e-1272.4
NC_015320:1342105:1360580136058013619561377Archaeoglobus veneficus SNP6 chromosome, complete genomeNa+/solute symporter6e-0962.8
NC_009328:293000:3261563261563276251470Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesodium/panthothenate symporter9e-0962
NC_016148:1877711:1908140190814019098581719Thermovirga lienii DSM 17291 chromosome, complete genomeNa+/solute symporter1e-0861.6
NC_004193:375416:5351285351285365641437Oceanobacillus iheyensis HTE831, complete genomesodium/panthothenate symporter2e-0861.2
NC_008254:102465:1186371186371221283492Mesorhizobium sp. BNC1, complete genomeperiplasmic sensor hybrid histidine kinase3e-0757
NC_013939:1688400:1701781170178117049903210Deferribacter desulfuricans SSM1, complete genomeserine phosphatase1e-0655.1
NC_009697:419443:4194434194434208581416Clostridium botulinum A str. ATCC 19397 chromosome, completesodium:solute symporter family protein2e-0654.7
NC_020211:3151458:3169357316935731708411485Serratia marcescens WW4, complete genomeproline:sodium symporter3e-0653.9
NC_015500:1236874:1258003125800312594601458Treponema brennaborense DSM 12168 chromosome, complete genomeSSS sodium solute transporter superfamily7e-0652.4
NC_008260:2442000:2461493246149324649603468Alcanivorax borkumensis SK2, complete genomeNa-solute symporter/sensory box histidinekinase, putative8e-0652.4
NC_008570:4009762:4022787402278740243041518Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomesodium/proline symporter8e-0652.4