Pre_GI: BLASTP Hits

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Query: NC_007951:4576825:4595275 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 4595275, End: 4595655, Length: 381

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007348:752692:7526927526927546111920Ralstonia eutropha JMP134 chromosome 2, complete sequencePAS1e-1168.2
NC_014315:1668366:1676756167675616804573702Nitrosococcus watsoni C-113 chromosome, complete genomediguanylate cyclase with PAS/PAC sensor9e-1165.5
NC_015497:3614817:3618235361823536219093675Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomemulti-sensor hybrid histidine kinase2e-0961.2
NC_007951:4576825:4596771459677145985191749Burkholderia xenovorans LB400 chromosome 1, complete sequenceSignal Transduction Histidine Kinases (STHK)2e-0960.8
NC_008752:2615360:2636818263681826414254608Acidovorax avenae subsp. citrulli AAC00-1, complete genomesignal transduction histidine kinase with CheB and CheR activity4e-0960.1
NC_014817:1063173:107812110781211078543423Asticcacaulis excentricus CB 48 chromosome 2, complete sequenceresponse regulator receiver protein5e-0959.7
NC_015497:3794000:380523738052373805926690Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genometwo component transcriptional regulator, winged helix family6e-0856.2
NC_014375:217612:240217240217240921705Brevundimonas subvibrioides ATCC 15264 chromosome, complete genometwo component transcriptional regulator, winged helix family5e-0856.2
NC_007760:4055860:4055860405586040591263267Anaeromyxobacter dehalogenans 2CP-C, complete genomePAS/PAC sensor hybrid histidine kinase1e-0755.5
NC_004663:2014035:2021666202166620256313966Bacteroides thetaiotaomicron VPI-5482, complete genometwo-component system sensor histidine kinase/response regulator, hybrid ('one-component system')2e-0754.3
NC_019940:1727384:1727384172738417329335550Thioflavicoccus mobilis 8321 chromosome, complete genomePAS domain-containing protein4e-0753.5
NC_014171:4681822:468825546882554688953699Bacillus thuringiensis BMB171 chromosome, complete genometwo-component response regulator vanR7e-0752.8
NC_004722:4767294:477263647726364773334699Bacillus cereus ATCC 14579, complete genomeTwo-component response regulator vanR7e-0752.8
NC_004193:3578710:358940435894043590105702Oceanobacillus iheyensis HTE831, complete genometwo-component response regulator9e-0752.4
NC_015565:348941:373756373756374424669Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completewinged helix family two component transcriptional regulator9e-0752.4
NC_014376:2766326:278597627859762786683708Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, winged helix family9e-0752.4
NC_010511:3947948:396609839660983966475378Methylobacterium sp. 4-46 chromosome, complete genomeresponse regulator receiver protein1e-0652
NC_009076:1566500:1589717158971715917982082Burkholderia pseudomallei 1106a chromosome I, complete sequenceresponse regulator/sensor histidine kinase1e-0652
NC_003909:4614789:461973746197374620435699Bacillus cereus ATCC 10987, complete genomeDNA-binding response regulator1e-0652
NC_011658:4616933:462145246214524622150699Bacillus cereus AH187 chromosome, complete genomeDNA-binding response regulator1e-0652
NC_016771:4569941:457521745752174575915699Bacillus cereus NC7401, complete genomeDNA-binding response regulator1e-0652
NC_014335:4566692:457304645730464573744699Bacillus cereus biovar anthracis str. CI chromosome, completeDNA-binding response regulator1e-0652
NC_017200:4632000:464566846456684646366699Bacillus thuringiensis serovar finitimus YBT-020 chromosome,DNA-binding response regulator1e-0652
NC_012472:4630485:464147646414764642174699Bacillus cereus 03BB102, complete genomeDNA-binding response regulator1e-0652
NC_008600:4626464:463745846374584638156699Bacillus thuringiensis str. Al Hakam, complete genomeDNA-binding response regulator1e-0652
NC_016779:4588000:459512445951244595822699Bacillus cereus F837/76 chromosome, complete genomephosphate regulon transcriptional regulatory protein PhoB1e-0652
NC_011725:4799905:480592148059214806619699Bacillus cereus B4264 chromosome, complete genomeDNA-binding response regulator1e-0652
NC_014010:1850500:191174519117451912410666Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeresponse regulator protein2e-0651.6
NC_011969:4556296:456330745633074564005699Bacillus cereus Q1 chromosome, complete genomeDNA-binding response regulator1e-0651.6
NC_007952:2812996:283090628309062831583678Burkholderia xenovorans LB400 chromosome 2, complete sequenceTwo component transcriptional regulator, winged helix family1e-0651.6
NC_016613:1877688:189538218953821896044663Vibrio sp. EJY3 chromosome 1, complete sequencewinged helix family two component transcriptional regulator1e-0651.6
NC_018012:1326553:132886713288671329232366Thiocystis violascens DSM 198 chromosome, complete genomeresponse regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains2e-0651.2
NC_015138:3160764:3160764316076431653684605Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completesignal transduction histidine kinase with CheB and CheR activity2e-0650.8
NC_008497:32160:321603216032876717Lactobacillus brevis ATCC 367, complete genomeDNA-binding response regulator, OmpR family (Rec-wHTH domains)3e-0650.8
NC_007947:1229807:1229807122980712319752169Methylobacillus flagellatus KT, complete genomeresponse regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)4e-0650.4
NC_009767:3335021:335200733520073352705699Roseiflexus castenholzii DSM 13941, complete genometwo component transcriptional regulator, winged helix family4e-0650.4
NC_010510:388885:397008397008397709702Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completetwo component transcriptional regulator, winged helix family3e-0650.4
NC_007517:3151742:315356131535613153929369Geobacter metallireducens GS-15, complete genomeresponse regulator receiver domain protein (CheY-like)3e-0650.4
NC_010505:3690000:369617336961733696922750Methylobacterium radiotolerans JCM 2831, complete genometwo component transcriptional regulator, winged helix family5e-0650.1
NC_015566:5197624:5213172521317252149561785Serratia sp. AS12 chromosome, complete genomeintegral membrane sensor hybrid histidine kinase4e-0650.1
NC_021184:549940:555731555731556408678Desulfotomaculum gibsoniae DSM 7213, complete genomeresponse regulator with CheY-like receiver domain and winged-helix DNA-binding domain4e-0650.1
NC_009495:2085000:210148921014892102154666Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA-binding response regulator4e-0650.1
NC_009697:2012500:203013020301302030795666Clostridium botulinum A str. ATCC 19397 chromosome, completeDNA-binding response regulator4e-0650.1
NC_009698:2012500:203034920303492031014666Clostridium botulinum A str. Hall chromosome, complete genomeDNA-binding response regulator4e-0650.1
NC_011772:4763542:477519147751914775889699Bacillus cereus G9842, complete genomeDNA-binding response regulator6e-0649.7
NC_018868:1352000:1379215137921513822293015Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomemulti-sensor hybrid histidine kinase6e-0649.7
NC_009832:5214850:5231229523122952330131785Serratia proteamaculans 568, complete genomeintegral membrane sensor hybrid histidine kinase6e-0649.7
NC_005139:2201820:224462322446232245222600Vibrio vulnificus YJ016 chromosome I, complete sequenceputative tetrathionate reductase complex, response regulator6e-0649.7
NC_012563:2230403:224820122482012248866666Clostridium botulinum A2 str. Kyoto, complete genomeDNA-binding response regulator5e-0649.7
NC_009699:2142177:215982921598292160494666Clostridium botulinum F str. Langeland chromosome, complete genomeDNA-binding response regulator5e-0649.7
NC_017297:2143000:215992921599292160594666Clostridium botulinum F str. 230613 chromosome, complete genomeDNA-binding response regulator5e-0649.7
NC_013440:1879306:1885536188553618908155280Haliangium ochraceum DSM 14365, complete genomesignal transduction histidine kinase with CheB and CheR activity5e-0649.7
NC_020133:902000:922628922628923311684Mycobacterium liflandii 128FXT, complete genometwo-component sensory transduction protein RegX35e-0649.7
NC_010612:957786:978965978965979648684Mycobacterium marinum M, complete genometwo-component sensory transduction protein RegX35e-0649.7
NC_007298:778723:793579793579793944366Dechloromonas aromatica RCB, complete genomeResponse regulator receiver8e-0649.3
NC_008554:2308500:2324965232496523268241860Syntrophobacter fumaroxidans MPOB, complete genomeintegral membrane sensor hybrid histidine kinase8e-0649.3
NC_010162:3275265:327637332763733277098726Sorangium cellulosum 'So ce 56', complete genometwo-component response regulator7e-0649.3
NC_004347:4302768:433202143320214332629609Shewanella oneidensis MR-1, complete genomeDNA-binding response regulator7e-0649.3
NC_013316:3056925:307244730724473073151705Clostridium difficile R20291, complete genometwo-component response regulator9e-0648.9
NC_009089:3142976:315867431586743159378705Clostridium difficile 630, complete genometwo-component response regulator9e-0648.9