Pre_GI: BLASTP Hits

Some Help

Query: NC_007384:1737885:1751571 Shigella sonnei Ss046, complete genome

Start: 1751571, End: 1752932, Length: 1362

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1818897:1829530182953018309181389Shigella sonnei 53G, complete genomenitrate/nitrite transport protein NarU0708
NC_004431:1713141:1737453173745317388411389Escherichia coli CFT073, complete genomeNitrite extrusion protein 20706
NC_007946:1586656:1611399161139916127871389Escherichia coli UTI89, complete genomenitrite extrusion protein 20705
NC_011750:1809943:1817664181766418190521389Escherichia coli IAI39 chromosome, complete genomenitrate/nitrite transporter0705
NC_002655:2015000:2025177202517720265651389Escherichia coli O157:H7 EDL933, complete genomenitrite extrusion protein 20704
NC_002695:2056545:2061908206190820632961389Escherichia coli O157:H7 str. Sakai, complete genomenitrite extrusion protein 20704
NC_011353:1971145:1976508197650819778961389Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenitrite extrusion protein 20704
NC_013008:1971662:1975484197548419768721389Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenitrate/nitrite transporter0704
NC_013941:1857724:1866372186637218677601389Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenitrite extrusion protein 20704
NC_008563:1577879:1600317160031716017231407Escherichia coli APEC O1, complete genomenitrite extrusion protein 20704
NC_011751:1714131:1738299173829917396871389Escherichia coli UMN026 chromosome, complete genomenitrate/nitrite transporter0704
NC_010498:1700447:1709920170992017113081389Escherichia coli SMS-3-5, complete genomenitrite extrusion protein 20704
NC_004337:1783645:1796339179633917977271389Shigella flexneri 2a str. 301, complete genomenitrite extrusion protein 20701
NC_008258:1784637:1795663179566317970511389Shigella flexneri 5 str. 8401, complete genomenitrite extrusion protein 20701
NC_017328:1835108:1848882184888218502701389Shigella flexneri 2002017 chromosome, complete genomeNitrite extrusion protein 20701
NC_004741:1823000:1833285183328518346731389Shigella flexneri 2a str. 2457T, complete genomenitrite extrusion protein 20698
NC_014562:2563466:2568870256887025702941425Pantoea vagans C9-1 chromosome, complete genomeNitrate transporter4e-141501
NC_008321:2649781:2658257265825726596751419Shewanella sp. MR-4, complete genomenitrite transporter2e-136485
NC_008322:2716676:2726219272621927276371419Shewanella sp. MR-7, complete genomenitrite transporter3e-136485
NC_016614:1152500:1166905116690511682781374Vibrio sp. EJY3 chromosome 2, complete sequencenitrite extrusion protein3e-116419
NC_013508:275081:2803182803182817211404Edwardsiella tarda EIB202, complete genomenitrate/nitrite transporter2e-98360
NC_012779:261438:2651282651282665011374Edwardsiella ictaluri 93-146, complete genomenitrite extrusion protein 29e-96350
NC_014973:2945942:2948826294882629502111386Geobacter sp. M18 chromosome, complete genomenitrite transporter2e-86320
NC_014147:765941:7741417741417754871347Moraxella catarrhalis RH4 chromosome, complete genomenitrate transporter NarK16e-85315
NC_010814:190673:1929201929201942931374Geobacter lovleyi SZ, complete genomenitrite transporter2e-80300
NC_018750:3315309:3329954332995433313751422Streptomyces venezuelae ATCC 10712, complete genomeNitrate or nitrite transporter2e-72273
NC_015125:788931:8057548057548071421389Microbacterium testaceum StLB037, complete genomenitrate/nitrite transporter4e-61235
NC_013093:915248:9192549192549206061353Actinosynnema mirum DSM 43827, complete genomemajor facilitator superfamily MFS_11e-47191
NC_009953:188000:2038072038072052221416Salinispora arenicola CNS-205 chromosome, complete genomenitrate/nitrite transporter-like protein2e-33144
NC_016783:429162:4329244329244342551332Corynebacterium diphtheriae INCA 402 chromosome, complete genomeputative nitrate transporter1e-31137
NC_013939:2117663:2125626212562621272271602Deferribacter desulfuricans SSM1, complete genomenitrate/nitrite extrusion protein5e-26119
NC_010612:5236229:5239483523948352409521470Mycobacterium marinum M, complete genomenitrite extrusion protein, NarK3_32e-25117
NC_020133:4841932:4843499484349948449681470Mycobacterium liflandii 128FXT, complete genomenitrite extrusion protein, NarK3_35e-25115
NC_010658:1772994:178469717846971784843147Shigella boydii CDC 3083-94, complete genomenitrite extrusion protein 29e-1995.1
NC_010658:1933605:194122519412251941428204Shigella boydii CDC 3083-94, complete genomenitrite extrusion protein 21e-1894.7
NC_013008:1513000:152844715284471528800354Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeIS encoded protein4e-1893.2
NC_002655:1655944:167120716712071671560354Escherichia coli O157:H7 EDL933, complete genomeputative IS encoded protein4e-1893.2
NC_010612:5236229:5248292524829252497041413Mycobacterium marinum M, complete genomeintegral membrane nitrite extrusion protein NarK3_46e-1479.3
NC_020133:4841932:4849757484975748508331077Mycobacterium liflandii 128FXT, complete genome3e-1377
NC_013887:1383127:1386672138667213881171446Methanocaldococcus sp. FS406-22 chromosome, complete genomemajor facilitator superfamily MFS_11e-0861.6
NC_011750:1849561:18674161867416186750893Escherichia coli IAI39 chromosome, complete genomehypothetical protein3e-0860.1
NC_010658:1193225:120818312081831208812630Shigella boydii CDC 3083-94, complete genome2e-0757.8
NC_002695:1571389:158728515872851587584300Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0757.4