Pre_GI: BLASTP Hits

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Query: NC_005139:796546:810680 Vibrio vulnificus YJ016 chromosome I, complete sequence

Start: 810680, End: 811216, Length: 537

Host Lineage: Vibrio vulnificus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a Biotype 1 hospital isolate from Taiwan. It contains larger chromosomes and >1000 genes as compared to Vibrio cholerae and contains a conjugative plasmid, pYJ016. There are numerous virulence factors including a cytolysin, protease, capsular polysaccharide as well as iron-uptake systems encoded in the genome. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Organisms of this species are opportunistic pathogens that can attack immunocompromised patients and causes gastroenteritis (inflammation of mucous membranes of stomach and intestine), wound infections, and primary septicemia (spread of the organism through the blood). This organism is the major cause of death from eating raw oysters, especially in people with liver damage. It only affects humans and other primates.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005139:2201820:227454722745472275083537Vibrio vulnificus YJ016 chromosome I, complete sequenceribonuclease H3e-92336
NC_016944:514742:530692530692531132441Vibrio cholerae IEC224 chromosome I, complete sequenceribonuclease H1e-25115
NC_012668:83641:892158921589655441Vibrio cholerae MJ-1236 chromosome 1, complete sequenceribonuclease H1e-25115
NC_002505:514732:530684530684531124441Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeribonuclease H1e-25115
NC_013456:212150:224924224924225361438Vibrio sp. Ex25 chromosome 1, complete genomeribonuclease HI3e-23107
NC_009439:4661102:466784046678404668328489Pseudomonas mendocina ymp, complete genomeribonuclease H9e-1476.3
NC_011899:948790:966757966757967566810Halothermothrix orenii H 168, complete genomeRibonuclease H1e-1272.4
NC_018678:1820390:183180018318001832270471Alteromonas macleodii str. 'English Channel 673' chromosome,ribonuclease HI3e-1271.2
NC_008313:2685531:268722326872232687660438Ralstonia eutropha H16 chromosome 1, complete sequenceRibonuclease HI1e-1169.3
NC_008601:1151653:115122011512201151678459Francisella tularensis subsp. novicida U112, complete genomeribonuclease H4e-1167.4
NC_010677:707881:730309730309730767459Francisella tularensis subsp. mediasiatica FSC147, complete genomeRibonuclease H4e-1167.4
NC_014654:1802007:180350918035091804333825Halanaerobium sp. 'sapolanicus' chromosome, complete genomealkylhydroperoxidase like protein, AhpD family6e-1167
NC_010524:2117347:213815921381592138641483Leptothrix cholodnii SP-6, complete genomeribonuclease H4e-1064.3
NC_015856:1733500:173704417370441737478435Collimonas fungivorans Ter331 chromosome, complete genomeribonuclease HI5e-1063.9
NC_010981:242500:283821283821284354534Wolbachia pipientis, complete genomeribonuclease h5e-1063.9
NC_008702:815264:826594826594827043450Azoarcus sp. BH72, complete genomeRnhA1 protein7e-1063.5
NC_005085:1269787:132167413216741322117444Chromobacterium violaceum ATCC 12472, complete genomeribonuclease H7e-1063.5
NC_014722:771483:790107790107790556450Burkholderia rhizoxinica HKI 454, complete genomeribonuclease HI9e-1063.2
NC_014484:591291:606079606079606510432Spirochaeta thermophila DSM 6192 chromosome, complete genomeribonuclease HI9e-1063.2
NC_014210:2372813:238997223899722390454483Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,ribonuclease H1e-0962.4
CP002185:234719:236227236227236694468Escherichia coli W, complete genomeribonuclease HI, degrades RNA of DNA-RNA hybrids2e-0962
CP002516:3863932:387520938752093875676468Escherichia coli KO11, complete genomeRibonuclease H2e-0962
NC_016822:246715:248223248223248690468Shigella sonnei 53G, complete genomeribonuclease H2e-0962
NC_016902:3863932:387520938752093875676468Escherichia coli KO11FL chromosome, complete genomeRibonuclease H2e-0962
NC_015682:1457004:1462429146242914635501122Thermodesulfobacterium sp. OPB45 chromosome, complete genomeRibonuclease H3e-0961.6
NC_014910:1765065:179035317903531790799447Alicycliphilus denitrificans BC chromosome, complete genomeribonuclease h4e-0960.8
NC_015731:1731896:174266317426631743127465Nitrosomonas sp. Is79A3 chromosome, complete genomeRibonuclease H6e-0960.5
NC_009720:1248866:127155212715521272289738Xanthobacter autotrophicus Py2, complete genomeribonuclease H9e-0959.7
NC_010531:708049:723840723840724304465Polynucleobacter necessarius STIR1, complete genomeribonuclease H1e-0859.3
NC_011149:309556:312504312504312971468Salmonella enterica subsp. enterica serovar Agona str. SL483,ribonuclease HI2e-0858.5
NC_015738:978794:104703510470351047529495Eggerthella sp. YY7918, complete genomehypothetical protein2e-0858.5
NC_011757:4293000:430359543035954304056462Methylobacterium chloromethanicum CM4, complete genomeRibonuclease H4e-0857.8
NC_017098:652681:675999675999676445447Spirochaeta africana DSM 8902 chromosome, complete genomeribonuclease HI4e-0857.8
NC_015500:900807:9278579278579294581602Treponema brennaborense DSM 12168 chromosome, complete genomeRibonuclease H8e-0856.6
NC_009697:419443:437417437417437866450Clostridium botulinum A str. ATCC 19397 chromosome, completeribonuclease H1e-0756.2
NC_017518:1701958:170195817019581702395438Neisseria meningitidis NZ-05/33 chromosome, complete genomeribonuclease HI1e-0756.2
NC_009901:2915939:293221229322122932769558Shewanella pealeana ATCC 700345, complete genomeRibonuclease H1e-0756.2
NC_004088:3382148:340564634056463406110465Yersinia pestis KIM, complete genomeribonuclease H2e-0755.8
NC_008149:3251196:327471332747133275177465Yersinia pestis Nepal516, complete genomeribonuclease HI2e-0755.8
NC_009381:1783886:182737918273791827843465Yersinia pestis Pestoides F chromosome, complete genomeribonuclease H2e-0755.8
NC_012587:1181004:119138711913871192223837Rhizobium sp. NGR234, complete genomeputative ribonuclease HI1e-0755.8
NC_012440:373863:382130382130382567438Persephonella marina EX-H1, complete genomeribonuclease HI2e-0755.5
NC_008321:2569315:258646925864692586945477Shewanella sp. MR-4, complete genomeribonuclease H2e-0755.5
NC_008577:2818546:284481028448102845286477Shewanella sp. ANA-3 chromosome 1, complete sequenceribonuclease H2e-0755.5
NC_008322:2637646:265481226548122655288477Shewanella sp. MR-7, complete genomeribonuclease H2e-0755.5
NC_014923:3968000:397125539712553972085831Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeRibonuclease H2e-0755.1
NC_004347:2668000:269017526901752690651477Shewanella oneidensis MR-1, complete genomeribonuclease HI5e-0753.9
NC_014643:609544:6117676117676130891323Rothia dentocariosa ATCC 17931 chromosome, complete genomeribonuclease HI6e-0753.5
NC_011891:2088134:211092421109242111475552Anaeromyxobacter dehalogenans 2CP-1, complete genomeribonuclease H6e-0753.5
NC_009937:1733196:174277817427781743338561Azorhizobium caulinodans ORS 571, complete genomeribonuclease H7e-0753.5
NC_013009:562470:601918601918602373456Neorickettsia risticii str. Illinois, complete genomeRNase H1e-0652.4
NC_013173:302375:314342314342314818477Desulfomicrobium baculatum DSM 4028, complete genomeRibonuclease H4e-0650.8
NC_007797:107950:114020114020114472453Anaplasma phagocytophilum HZ, complete genomeribonuclease H16e-0650.4