Pre_GI: BLASTP Hits

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Query: NC_004741:1792442:1799149 Shigella flexneri 2a str. 2457T, complete genome

Start: 1799149, End: 1800210, Length: 1062

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:1750964:1760732176073217631942463Shigella flexneri 5 str. 8401, complete genome0694
NC_010658:1593137:1601840160184016035251686Shigella boydii CDC 3083-94, complete genomeinner membrane ABC transporter ATP-binding protein0693
NC_011415:1669484:1674734167473416764191686Escherichia coli SE11 chromosome, complete genomeputative ABC transporter ATP-binding protein0691
NC_013941:1894496:1903199190319919048841686Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeinner membrane ABC transporter ATP-binding protein0690
NC_013361:2047170:2055873205587320575581686Escherichia coli O26:H11 str. 11368 chromosome, complete genomefused multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0690
NC_013364:1902761:1911464191146419131491686Escherichia coli O111:H- str. 11128, complete genomefused putative multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0690
CU928160:1579375:1584625158462515863101686Escherichia coli IAI1 chromosome, complete genomeputative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component0689
NC_011741:1579375:1584625158462515863101686Escherichia coli IAI1 chromosome, complete genomeputative multidrug transporter fused subunits of ABC superfamily transporter: permease; ATP-binding component0689
NC_011601:1675000:1680303168030316819881686Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomefused multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0689
AP010958:1711656:1720359172035917220441686Escherichia coli O103:H2 str. 12009 DNA, complete genomefused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0689
NC_013353:1711656:1720359172035917220441686Escherichia coli O103:H2 str. 12009, complete genomefused multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0689
NC_011748:1684777:1690027169002716917121686Escherichia coli 55989, complete genomeputative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component0689
CP002516:2395578:2417586241758624192711686Escherichia coli KO11, complete genomeABC transporter related protein0689
NC_009801:1678790:1687493168749316891781686Escherichia coli E24377A, complete genomeinner membrane ABC transporter ATP-binding protein yddA0689
CU928145:1684777:1690027169002716917121686Escherichia coli 55989 chromosome, complete genomeputative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component0689
NC_016902:2395578:2417586241758624192711686Escherichia coli KO11FL chromosome, complete genomeABC transporter0689
NC_011750:1849561:1854811185481118564961686Escherichia coli IAI39 chromosome, complete genomeputative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding protein0688
NC_002655:1966464:1987886198788619895711686Escherichia coli O157:H7 EDL933, complete genomeputative ATP-binding component of a transport system0687
NC_002695:2091890:2098901209890121005861686Escherichia coli O157:H7 str. Sakai, complete genomeputative ATP-binding component of a transport system0687
NC_011353:2004800:2013502201350220151871686Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeinner membrane ABC transporter ATP-binding protein0687
NC_013008:2007228:2012478201247820141631686Escherichia coli O157:H7 str. TW14359 chromosome, complete genomefused multidrug transporter subunits of ABC superfamily: membrane component, ATP-binding protein0687
NC_011742:1574036:1579286157928615809711686Escherichia coli S88 chromosome, complete genomemultidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component0686
NC_004431:1754627:1763329176332917650141686Escherichia coli CFT073, complete genomeHypothetical ABC transporter ATP-binding protein yddA0686
NC_008253:1534840:1540090154009015417751686Escherichia coli 536, complete genomehypothetical ABC transporter ATP-binding protein YddA0686
NC_007946:1632025:1637275163727516389601686Escherichia coli UTI89, complete genomehypothetical ABC transporter ATP-binding protein yddA0686
NC_008563:1620943:1626193162619316278781686Escherichia coli APEC O1, complete genomeputative ATP-binding component of a transport system0686
NC_007613:1533024:1547559154755915492441686Shigella boydii Sb227, complete genome0685
NC_010498:1659328:1672795167279516744801686Escherichia coli SMS-3-5, complete genomeinner membrane ABC transporter ATP-binding protein0685
NC_016822:1781644:1793145179314517948301686Shigella sonnei 53G, complete genomeABC transporter ATP-binding protein0684
NC_007384:1696831:1710187171018717118721686Shigella sonnei Ss046, complete genomeputative ATP-binding component of a transport system0684
NC_011751:1770376:1775626177562617773111686Escherichia coli UMN026 chromosome, complete genomeputative multidrug ABC transporter permease/ATP-binding protein0682
NC_010468:2345781:2364524236452423662091686Escherichia coli ATCC 8739, complete genomeABC transporter related0682
NC_009800:1589000:1594480159448015961651686Escherichia coli HS, complete genomeinner membrane ABC transporter ATP-binding protein0682
NC_012967:1546000:1551608155160815532931686Escherichia coli B str. REL606 chromosome, complete genomemultidrug ABC transporter membrane/ATP-binding protein0681
NC_000913:1570431:1575681157568115773661686Escherichia coli K12, complete genomefused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0681
NC_010473:1661000:1666276166627616679611686Escherichia coli str. K-12 substr. DH10B, complete genomefused predicted multidrug transporter subunits of ABC superfamily: membrane component; ATP-binding component0681
AC_000091:1574000:1579371157937115810561686Escherichia coli W3110 DNA, complete genomefused predicted multidrug transporter subunits and membrane component and ATP-binding component of ABC superfamily0681
NC_012759:1462490:1467740146774014694251686Escherichia coli BW2952 chromosome, complete genomefused putative multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0681
CP002185:1681327:1686577168657716882351659Escherichia coli W, complete genomefused predicted multidrug transporter subunits of ABC superfamily: membrane component/ATP-binding component0669
NC_011740:1595381:1606431160643116080861656Escherichia fergusonii ATCC 35469, complete genomeputative multidrug transporter fused subunits of ABC superfamily transporter: permease component; ATP-binding component1e-175615
NC_008781:654289:6764326764326782641833Polaromonas naphthalenivorans CJ2, complete genomeABC transporter domain protein7e-55214
NC_004129:1014986:1029161102916110308881728Pseudomonas fluorescens Pf-5, complete genomeABC transporter, ATP-binding protein4e-54211
NC_020064:3790472:3792034379203437937611728Serratia marcescens FGI94, complete genomeABC-type uncharacterized transport system, permease and ATPase component6e-50198
NC_020411:114683:1401881401881419601773Hydrogenobaculum sp. HO, complete genomeABC transporter domain-containing protein4e-50198
NC_015557:114648:1401531401531419251773Hydrogenobaculum sp. 3684 chromosome, complete genomeABC transporter domain-containing protein4e-50198
NC_015587:114684:1401891401891419611773Hydrogenobaculum sp. SHO chromosome, complete genomeABC transporter domain-containing protein4e-50198
NC_011126:129937:1366901366901384621773Hydrogenobaculum sp. Y04AAS1, complete genomeABC transporter domain protein3e-48192
NC_010511:2079744:2079744207974420815341791Methylobacterium sp. 4-46 chromosome, complete genomeABC transporter2e-45183
NC_015722:209722:2282802282802296621383Candidatus Midichloria mitochondrii IricVA chromosome, completeABC transporter1e-38160
NC_014540:2908912:2918212291821229200141803Burkholderia sp. CCGE1003 chromosome 2, complete sequenceABC transporter-like protein4e-38159
NC_013209:1406793:1406793140679314085531761Acetobacter pasteurianus IFO 3283-01, complete genomeABC transporter ATP-binding protein5e-35148
NC_017100:1407804:1407804140780414095641761Acetobacter pasteurianus IFO 3283-03, complete genomeABC transporter ATP-binding protein5e-35148
NC_017108:1406787:1406787140678714085471761Acetobacter pasteurianus IFO 3283-12, complete genomeABC transporter ATP-binding protein5e-35148
NC_017111:1406787:1406787140678714085471761Acetobacter pasteurianus IFO 3283-32, complete genomeABC transporter ATP-binding protein5e-35148
NC_017121:1406787:1406787140678714085471761Acetobacter pasteurianus IFO 3283-07, complete genomeABC transporter ATP-binding protein5e-35148
NC_017125:1407804:1407804140780414095641761Acetobacter pasteurianus IFO 3283-22, complete genomeABC transporter ATP-binding protein5e-35148
NC_017146:1407804:1407804140780414095641761Acetobacter pasteurianus IFO 3283-26, complete genomeABC transporter ATP-binding protein5e-35148
NC_017150:1406793:1406793140679314085531761Acetobacter pasteurianus IFO 3283-01-42C, complete genomeABC transporter ATP-binding protein5e-35148
NC_010501:1868888:1902752190275219045691818Pseudomonas putida W619, complete genomeABC transporter domain protein1e-33144
NC_010645:1523867:1540348154034815421051758Bordetella avium 197N, complete genomeABC transporter, ATP-binding protein2e-33143
NC_014323:3195178:3212034321203432138181785Herbaspirillum seropedicae SmR1 chromosome, complete genomeABC transporter permease and ATPase components protein2e-33143
NC_008702:2520500:2541810254181025435881779Azoarcus sp. BH72, complete genomeconserved hypothetical membran protein5e-33142
NC_008601:1811327:1830749183074918324101662Francisella tularensis subsp. novicida U112, complete genomeATP-binding cassette (ABC) superfamily protein2e-31137
NC_011884:1413831:1423364142336414253672004Cyanothece sp. PCC 7425, complete genomeABC transporter domain protein1e-27124
NC_007643:3799425:3797539379753937994281890Rhodospirillum rubrum ATCC 11170, complete genomeABC transporter component2e-27123
NC_015723:1347946:1362649136264913644091761Cupriavidus necator N-1 chromosome 2, complete sequenceABC transporter ATP-binding protein/ permease3e-26119
NC_016816:1545354:1545354154535415470451692Pantoea ananatis LMG 5342, complete genomeABC transporter ATP-binding protein3e-26119
NC_012039:412837:431245431245432225981Campylobacter lari RM2100, complete genometransmembrane transport protein, SbmA/BacA family3e-2099.8
NC_009715:1470419:1476803147680314779661164Campylobacter curvus 525.92 chromosome, complete genomeputative transporter8e-1891.7
NC_007880:1780702:180260118026011803545945Francisella tularensis subsp. holarctica, complete genome1e-1791.3
NC_014837:387868:4130954130954143361242Pantoea sp. At-9b chromosome, complete genomeSbmABacA family protein8e-1581.6
NC_019907:1411124:1411124141112414123501227Liberibacter crescens BT-1 chromosome, complete genomeSbmA protein5e-1375.5
NC_016026:1969766:2000268200026820022081941Micavibrio aeruginosavorus ARL-13 chromosome, complete genomeABC transporter family protein1e-1067.4