Pre_GI: BLASTP Hits

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Query: NC_004463:8401060:8401903 Bradyrhizobium japonicum USDA 110, complete genome

Start: 8401903, End: 8402280, Length: 378

Host Lineage: Bradyrhizobium diazoefficiens; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was isolated from Glycine hispida in 1959 in Florida, USA, and has been widely studied because of its superior symbiotic nitrogen fixation with soybeans as compared to other strains. This strain contains a 681 Kb symbiosis island that contains genes for nitrogen fixation and root nodule formation. The chromosome also contains genes resembling those of type III and IV secretion systems.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004463:5722468:574022157402215740616396Bradyrhizobium japonicum USDA 110, complete genometwo-component response regulator1e-30131
NC_017249:3229500:323374832337483234140393Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-27120
NC_017249:4398000:440589244058924406293402Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein8e-27119
NC_004463:2344128:235585723558572356150294Bradyrhizobium japonicum USDA 110, complete genomeresponse regulator1e-1685.1
NC_017249:7917586:792609379260937926326234Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein8e-1579
NC_018000:2054098:205832620583262058583258Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein1e-1272
NC_016010:1822212:1896930189693018997852856Xanthomonas axonopodis pv. citrumelo F1 chromosome, completesensory box histidine kinase/response regulator hybrid2e-1167.8
NC_004463:2344128:2350024235002423519281905Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator8e-1165.9
NC_017249:7917586:7930165793016579321591995Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator7e-1165.9
NC_013093:2599591:2617931261793126195711641Actinosynnema mirum DSM 43827, complete genomePAS/PAC sensor hybrid histidine kinase7e-1062.8
NC_020209:2838582:2838582283858228424063825Pseudomonas poae RE*1-1-14, complete genomesensor histidine kinase7e-1062.4
NC_011146:2485625:2485625248562524894073783Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase7e-0959.3
NC_009512:27783:448694486945543675Pseudomonas putida F1, complete genometwo component heavy metal response transcriptional regulator, winged helix family1e-0858.9
NC_010501:30000:495854958550259675Pseudomonas putida W619, complete genometwo component heavy metal response transcriptional regulator, winged helix family1e-0858.9
NC_002947:8394:328933289333567675Pseudomonas putida KT2440, complete genomeDNA-binding response regulator CzrR1e-0858.9
NC_010322:29983:456514565146325675Pseudomonas putida GB-1 chromosome, complete genometwo component heavy metal response transcriptional regulator1e-0858.9
NC_014376:3732547:375192237519223752593672Clostridium saccharolyticum WM1 chromosome, complete genometwo component transcriptional regulator, winged helix family2e-0858.2
NC_008609:1976403:2056927205692720599112985Pelobacter propionicus DSM 2379, complete genomemulti-sensor hybrid histidine kinase2e-0857.8
NC_014614:284005:287079287079287765687Clostridium sticklandii, complete genomeDNA-binding response regulator3e-0857.4
NC_011886:2950411:298234729823472983141795Arthrobacter chlorophenolicus A6, complete genometwo component transcriptional regulator, winged helix family3e-0857.4
NC_011757:3486283:3521250352125035240782829Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase3e-0857.4
NC_006087:237500:260176260176260898723Leifsonia xyli subsp. xyli str. CTCB07, complete genometwo-component system, regulatory protein3e-0857.4
NC_012988:1817000:1843203184320318447081506Methylobacterium extorquens DM4, complete genomehybrid histidine kinase2e-0857.4
NC_010511:1351000:1376832137683213781901359Methylobacterium sp. 4-46 chromosome, complete genometwo component sigma-54 specific Fis family transcriptional regulator3e-0857
NC_018868:619113:636899636899637576678Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeresponse regulator receiver domain-containing protein3e-0857
NC_007761:3047321:305125730512573051790534Rhizobium etli CFN 42, complete genomeprobable two-component response regulator protein4e-0856.6
NC_015164:1877981:188806018880601888752693Bacteroides salanitronis DSM 18170 chromosome, complete genometwo component transcriptional regulator, winged helix family5e-0856.6
NC_012491:1293086:129243112924311293120690Brevibacillus brevis NBRC 100599, complete genometwo-component response regulator9e-0855.8
NC_014924:2399524:2397876239787623995371662Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomehistidine kinase9e-0855.8
NC_014960:1670778:168588916858891686623735Anaerolinea thermophila UNI-1, complete genomeputative OmpR family two-component system response regulator8e-0855.8
NC_017249:2073558:2073998207399820757671770Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein9e-0855.5
NC_013722:1577818:159414215941421594507366Xanthomonas albilineans, complete genomeprobable two-component system regulatory protein1e-0755.5
NC_015732:2680182:2699034269903427016432610Spirochaeta caldaria DSM 7334 chromosome, complete genomemulti-sensor hybrid histidine kinase1e-0755.5
NC_013165:647894:670076670076670804729Slackia heliotrinireducens DSM 20476, complete genomeresponse regulator with CheY-like receiver domain and winged-helix DNA-binding domain1e-0755.5
NC_010501:5735656:573706257370625737739678Pseudomonas putida W619, complete genometwo component heavy metal response transcriptional regulator, winged helix family1e-0755.1
NC_021184:3149000:316243031624303163143714Desulfotomaculum gibsoniae DSM 7213, complete genomeresponse regulator with CheY-like receiver domain and winged-helix DNA-binding domain2e-0754.7
NC_008536:7546973:757167275716727572040369Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver protein2e-0754.3
NC_010505:5525461:5554984555498455578242841Methylobacterium radiotolerans JCM 2831, complete genomemulti-sensor hybrid histidine kinase3e-0753.9
NC_009725:2517428:252644925264492527144696Bacillus amyloliquefaciens FZB42, complete genomeYrkP3e-0753.9
NC_009659:892272:893704893704894387684Janthinobacterium sp. Marseille chromosome, complete genomeresponse regulator of copper sensing system3e-0753.9
NC_011027:817311:8281228281228305182397Chlorobaculum parvum NCIB 8327, complete genomemulti-sensor hybrid histidine kinase3e-0753.9
NC_008783:222000:244912244912245706795Bartonella bacilliformis KC583, complete genomesigma-70 dependent response regulator3e-0753.9
NC_015977:2445835:245081024508102451496687Roseburia hominis A2-183 chromosome, complete genomehypothetical protein3e-0753.9
NC_015731:2400526:240748124074812408203723Nitrosomonas sp. Is79A3 chromosome, complete genometwo component transcriptional regulator PhoB, winged helix family3e-0753.5
NC_012472:2109719:213255221325522133235684Bacillus cereus 03BB102, complete genomeDNA-binding response regulator3e-0753.5
NC_015589:1439794:145563314556331456319687Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver4e-0753.5
NC_011894:3623500:3624775362477536267631989Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase5e-0753.1
NC_014829:3741843:374419637441963744891696Bacillus cellulosilyticus DSM 2522 chromosome, complete genometwo component transcriptional regulator, winged helix family5e-0753.1
NC_020410:2509057:252819025281902528885696Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completetwo-component response regulator [YrkQ]4e-0753.1
NC_002570:388000:401097401097401765669Bacillus halodurans C-125, complete genometwo-component response regulator6e-0752.8
NC_007775:2702045:271442027144202715112693Synechococcus sp. JA-3-3Ab, complete genomeDNA-binding response regulator6e-0752.8
NC_013316:371953:388451388451389185735Clostridium difficile R20291, complete genometwo-component response regulator6e-0752.8
NC_012108:4387331:4402270440227044053743105Desulfobacterium autotrophicum HRM2, complete genometwo domain fusion protein (N:Methyl-accepting chemotaxis protein-C:sensory box histidine kinase/response regulator)7e-0752.8
NC_007802:1991211:202008620200862020805720Jannaschia sp. CCS1, complete genometwo component transcriptional regulator, winged helix family9e-0752.4
NC_005945:3359598:336997433699743370651678Bacillus anthracis str. Sterne, complete genomeDNA-binding response regulator9e-0752.4
NC_002947:6123608:613497661349766135653678Pseudomonas putida KT2440, complete genometranscriptional activator CopR9e-0752.4
NC_000964:2702376:270366127036612704356696Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein7e-0752.4
NC_007907:960104:102497810249781025670693Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-0752.4
NC_019896:1483073:152142215214221522117696Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completesensory transduction protein YrkP7e-0752.4
NC_009662:1849239:185260618526061853262657Nitratiruptor sp. SB155-2, complete genometwo-component response regulator1e-0652
NC_009328:2083386:208272120827212083389669Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeDNA-binding response regulator1e-0652
NC_014006:611592:6125216125216145842064Sphingobium japonicum UT26S chromosome 1, complete genomesignal transduction histidine kinase1e-0652
NC_008278:744777:7510077510077520831077Frankia alni ACN14a, complete genomePutative two-component system response regulator (partial match)1e-0652
NC_009434:3611738:366507236650723665806735Pseudomonas stutzeri A1501, complete genometranscriptional activator CopR1e-0652
NC_011757:3486283:3524427352442735276243198Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase1e-0652
NC_007973:3240866:326059432605943261259666Ralstonia metallidurans CH34 chromosome 1, complete sequencetwo component transcriptional regulator, winged helix family1e-0652
NC_015740:2692023:270390627039062704583678Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completetranscriptional activator CopR1e-0652
NC_007510:3340008:3366966336696633683211356Burkholderia sp. 383 chromosome 1, complete sequencetwo component, sigma54 specific, transcriptional regulator, Fis family1e-0652
NC_014335:2009662:203188220318822032565684Bacillus cereus biovar anthracis str. CI chromosome, completeDNA-binding response regulator1e-0652
NC_020209:4643901:466347146634714664160690Pseudomonas poae RE*1-1-14, complete genomephosphate regulon two-component system response regulator1e-0652
NC_010172:798923:8596738596738628703198Methylobacterium extorquens PA1, complete genomePAS sensor protein2e-0651.6
NC_012988:769981:8362228362228394193198Methylobacterium extorquens DM4, complete genomesensor hybrid histidine kinase with multiple PAS/PAC and response regulator receiver domains2e-0651.6
NC_004578:3241618:3258416325841632600201605Pseudomonas syringae pv. tomato str. DC3000, complete genomesensory box histidine kinase/response regulator2e-0651.6
NC_015672:101878:117666117666118031366Flexistipes sinusarabici DSM 4947 chromosome, complete genomeresponse regulator receiver protein2e-0651.6
NC_020300:1344453:136173213617321362526795Bartonella australis Aust/NH1, complete genometwo-component response regulator1e-0651.6
NC_007759:964000:9817439817439831161374Syntrophus aciditrophicus SB, complete genomeresponse regulator containing sigma 54 interaction domain1e-0651.6
NC_012472:5015621:502605550260555026726672Bacillus cereus 03BB102, complete genomeDNA-binding response regulator1e-0651.6
NC_009439:2427120:246569624656962466373678Pseudomonas mendocina ymp, complete genometwo component heavy metal response transcriptional regulator1e-0651.6
NC_015410:2698572:272946827294682730145678Pseudomonas mendocina NK-01 chromosome, complete genometwo component heavy metal response transcriptional regulator1e-0651.6
NC_013205:2610956:265225226522522652971720Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,two component transcriptional regulator, winged helix family2e-0651.2
NC_011655:171639:194423194423195103681Bacillus cereus AH187 plasmid pAH187_270, complete sequenceDNA-binding response regulator2e-0651.2
NC_012491:3115518:314118631411863141860675Brevibacillus brevis NBRC 100599, complete genometwo-component response regulator2e-0651.2
NC_015589:1468774:147080614708061471519714Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeresponse regulator receiver2e-0651.2
NC_016584:4860360:486399248639924864687696Desulfosporosinus orientis DSM 765 chromosome, complete genomeresponse regulator with CheY-like receiver domain and winged-helix DNA-binding domain2e-0651.2
NC_015733:5909821:593534859353485936007660Pseudomonas putida S16 chromosome, complete genomeDNA-binding response regulator CzrR2e-0651.2
NC_017986:2548720:257908625790862579745660Pseudomonas putida ND6 chromosome, complete genomeDNA-binding response regulator CzrR2e-0651.2
NC_017249:7917586:7926765792676579284471683Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator3e-0650.8
NC_008536:8541267:856066785606678561062396Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver protein3e-0650.8
NC_016935:2069562:206884920688492069565717Paenibacillus mucilaginosus 3016 chromosome, complete genomeresponse regulator2e-0650.8
NC_020304:129321:1431241431241457452622Desulfocapsa sulfexigens DSM 10523, complete genomePAS domain S-box2e-0650.8
NC_011071:1178423:1178423117842311804922070Stenotrophomonas maltophilia R551-3, complete genomePAS/PAC sensor hybrid histidine kinase2e-0650.8
NC_011969:4945441:495717549571754957846672Bacillus cereus Q1 chromosome, complete genomeDNA-binding response regulator2e-0650.8
NC_015690:1542061:154134815413481542064717Paenibacillus mucilaginosus KNP414 chromosome, complete genomeresponse regulator2e-0650.8
NC_010473:623810:646575646575647258684Escherichia coli str. K-12 substr. DH10B, complete genomeDNA-binding response regulator in two-component regulatory system with CusS4e-0650.4
NC_012759:461680:496743496743497426684Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional activator CusR4e-0650.4
NC_015381:3789661:380965338096533810330678Burkholderia gladioli BSR3 chromosome 1, complete sequenceTwo component transcriptional regulator, winged helix family protein3e-0650.4
NC_009778:4188000:420269342026934203373681Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-0650.4
CU928145:3983432:398679439867943987474681Escherichia coli 55989 chromosome, complete genomeDNA-binding response regulator in two-component regulatory system with CusS3e-0650.4
NC_014121:5000069:500299650029965003676681Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeDNA-binding transcriptional activator CusR3e-0650.4
NC_011748:3983432:398679439867943987474681Escherichia coli 55989, complete genomeDNA-binding transcriptional activator CusR3e-0650.4
NC_009342:589741:600802600802601476675Corynebacterium glutamicum R chromosome, complete genomehypothetical protein3e-0650.4
NC_016783:201066:226085226085226786702Corynebacterium diphtheriae INCA 402 chromosome, complete genometwo-component system response regulator4e-0650.1
NC_012918:1814000:1823304182330418264473144Geobacter sp. M21 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase4e-0650.1
NC_015733:5955467:595859459585945959259666Pseudomonas putida S16 chromosome, complete genometwo component heavy metal response transcriptional regulator5e-0650.1
NC_009953:1581088:159834215983421599100759Salinispora arenicola CNS-205 chromosome, complete genometwo component transcriptional regulator5e-0650.1
NC_015563:3511951:3533202353320235356942493Delftia sp. Cs1-4 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase5e-0649.7
NC_011146:3089297:3089297308929730924403144Geobacter bemidjiensis Bem, complete genomePAS/PAC sensor hybrid histidine kinase5e-0649.7
NC_016616:1091606:110243511024351103112678Dechlorosoma suillum PS chromosome, complete genomeheavy metal response regulator7e-0649.3
NC_009091:1514770:153341215334121534158747Prochlorococcus marinus str. MIT 9301, complete genometwo-component response regulator7e-0649.3
NC_014377:1400544:142446714244671425150684Thermosediminibacter oceani DSM 16646 chromosome, complete genometwo component transcriptional regulator, winged helix family7e-0649.3
NC_011146:63912:7967479674814101737Geobacter bemidjiensis Bem, complete genomehistidine kinase9e-0648.9
NC_015671:3093596:311586331158633116528666Cellvibrio gilvus ATCC 13127 chromosome, complete genomewinged helix family two component transcriptional regulator1e-0548.9
NC_010725:4035397:4040090404009040425132424Methylobacterium populi BJ001, complete genomemulti-sensor hybrid histidine kinase1e-0548.9