Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3650604 Shigella flexneri 2a str. 301, complete genome

Start: 3650604, End: 3652100, Length: 1497

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011740:1595381:1610545161054516133432799Escherichia fergusonii ATCC 35469, complete genomeputative zinc protease3e-1893.6
NC_010338:4015928:4046903404690340498272925Caulobacter sp. K31, complete genomepeptidase M16 domain protein2e-1584
NC_014816:545441:5454415454415483502910Asticcacaulis excentricus CB 48 chromosome 1, complete sequencepeptidase m16 domain protein3e-1583.6
NC_016822:1781644:1797285179728518000802796Shigella sonnei 53G, complete genomepeptidase2e-1481.3
NC_007384:1696831:1715766171576617185612796Shigella sonnei Ss046, complete genomeputative peptidase2e-1481.3
NC_010658:1593137:1596590159659015993732784Shigella boydii CDC 3083-94, complete genomepeptidase, M16B family2e-1480.9
NC_008253:1534840:1534840153484015376232784Escherichia coli 536, complete genomeprobable zinc protease PqqL3e-1480.5
NC_011750:1849561:1849561184956118523562796Escherichia coli IAI39 chromosome, complete genomeputative membrane-associated peptidase3e-1480.5
NC_007613:1533024:1551699155169915544942796Shigella boydii Sb227, complete genomeputative peptidase3e-1480.5
NC_007946:1632025:1632025163202516348202796Escherichia coli UTI89, complete genomeprobable zinc protease PqqL3e-1480.5
NC_008563:1620943:1620943162094316237382796Escherichia coli APEC O1, complete genomeprobable zinc protease PqqL3e-1480.5
NC_011742:1574036:1574036157403615768312796Escherichia coli S88 chromosome, complete genomemembrane-associated peptidase3e-1480.5
NC_011751:1770376:1770376177037617731712796Escherichia coli UMN026 chromosome, complete genomeputative membrane-associated peptidase3e-1480.5
NC_004431:1754627:1758079175807917608742796Escherichia coli CFT073, complete genomeProbable zinc protease pqqL2e-1480.5
NC_011601:1675000:1675053167505316778362784Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomepeptidase3e-1480.1
NC_010498:1659328:1676947167694716797302784Escherichia coli SMS-3-5, complete genomeM16B family peptidase5e-1479.7
NC_013361:2047170:2050623205062320534062784Escherichia coli O26:H11 str. 11368 chromosome, complete genomepeptidase5e-1479.7
NC_013364:1902761:1906214190621419089972784Escherichia coli O111:H- str. 11128, complete genomeputative peptidase5e-1479.7
CP002185:1681327:1681327168132716841102784Escherichia coli W, complete genomepredicted peptidase7e-1479.3
AP010958:1711656:1715109171510917178922784Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted peptidase8e-1479
NC_013353:1711656:1715109171510917178922784Escherichia coli O103:H2 str. 12009, complete genomepeptidase8e-1479
CU928160:1579375:1579375157937515821702796Escherichia coli IAI1 chromosome, complete genomeputative membrane-associated peptidase7e-1479
NC_011741:1579375:1579375157937515821702796Escherichia coli IAI1 chromosome, complete genomeputative membrane-associated peptidase7e-1479
NC_011748:1684777:1684777168477716875722796Escherichia coli 55989, complete genomeputative membrane-associated peptidase7e-1479
CU928145:1684777:1684777168477716875722796Escherichia coli 55989 chromosome, complete genomeputative membrane-associated peptidase7e-1479
NC_009801:1678790:1682243168224316850262784Escherichia coli E24377A, complete genomepeptidase, M16B family7e-1479
NC_010468:2345781:2368676236867623714592784Escherichia coli ATCC 8739, complete genomepeptidase M16 domain protein1e-1378.6
NC_012967:1546000:1546358154635815491532796Escherichia coli B str. REL606 chromosome, complete genomeputative peptidase9e-1478.6
NC_011415:1669484:1669484166948416722792796Escherichia coli SE11 chromosome, complete genomeputative peptidase9e-1478.6
NC_012759:1462490:1462490146249014652852796Escherichia coli BW2952 chromosome, complete genomeputative peptidase1e-1378.2
AC_000091:1574000:1574121157412115769162796Escherichia coli W3110 DNA, complete genomepredicted peptidase1e-1378.2
NC_010473:1661000:1661026166102616638212796Escherichia coli str. K-12 substr. DH10B, complete genomepredicted peptidase1e-1378.2
NC_000913:1570431:1570431157043115732262796Escherichia coli K12, complete genomepredicted peptidase1e-1378.2
NC_002695:2091890:2093651209365120964462796Escherichia coli O157:H7 str. Sakai, complete genomeputative peptidase2e-1377.4
NC_013008:2007228:2007228200722820100232796Escherichia coli O157:H7 str. TW14359 chromosome, complete genomepeptidase2e-1377.4
NC_011353:2004800:2008252200825220110352784Escherichia coli O157:H7 str. EC4115 chromosome, complete genomepeptidase, M16B family2e-1377.4
NC_013941:1894496:1897949189794919007442796Escherichia coli O55:H7 str. CB9615 chromosome, complete genomepeptidase3e-1377
NC_009800:1589000:1589233158923315920132781Escherichia coli HS, complete genomepeptidase, M16B family1e-1275.1
NC_013943:1019213:1020348102034810231792832Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomepeptidase M16 domain-containing protein2e-1273.9
NC_015160:1697125:1705789170578917086082820Odoribacter splanchnicus DSM 20712 chromosome, complete genomepeptidase M16 domain-containing protein6e-1169.3
NC_011144:1264871:1267014126701412698632850Phenylobacterium zucineum HLK1, complete genomepeptidase, M16 family7e-1168.9
NC_008258:1750964:1765649176564917692093561Shigella flexneri 5 str. 8401, complete genome2e-0963.9
NC_004741:1792442:1804257180425718067762520Shigella flexneri 2a str. 2457T, complete genome1e-0758.5
NC_011884:1413831:1428184142818414308742691Cyanothece sp. PCC 7425, complete genomepeptidase M16 domain protein5e-0756.2
NC_019960:1658657:1679907167990716827262820Prevotella dentalis DSM 3688 chromosome 1, complete sequenceputative Zn-dependent peptidase6e-0652.8
NC_011769:247202:2631082631082659212814Desulfovibrio vulgaris str. 'Miyazaki F', complete genomepeptidase M16 domain protein9e-0652