Pre_GI: BLASTP Hits

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Query: NC_004337:309833:312995 Shigella flexneri 2a str. 301, complete genome

Start: 312995, End: 313720, Length: 726

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:309833:3269163269163280791164Shigella flexneri 2a str. 301, complete genomeputative phage integrase2e-137488
NC_004741:310382:3260603260603272231164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase2e-137488
NC_004741:310382:3138433138433150061164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase3e-137487
NC_006905:368942:3728473728473740101164Salmonella enterica subsp. enterica serovar Choleraesuis strInt9e-127452
NC_016860:364981:3688873688873700501164Salmonella enterica subsp. enterica serovar Typhimurium strintegrase2e-126451
NC_011083:374000:3768503768503780131164Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,site-specific recombinase, phage integrase family3e-125447
NC_000913:558920:5640385640385652011164Escherichia coli K12, complete genomeDLP12 prophage; predicted integrase2e-101368
NC_010473:498252:5033705033705045331164Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted integrase2e-101368
AC_000091:558920:5640385640385652011164Escherichia coli W3110 DNA, complete genomepredicted integrase2e-101368
NC_012759:461680:4667984667984679611164Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative integrase2e-101368
NC_011751:643976:6449436449436461061164Escherichia coli UMN026 chromosome, complete genomeputative integrase; DLP12 prophage2e-101368
NC_011415:600375:6083326083326094951164Escherichia coli SE11 chromosome, complete genomephage integrase4e-101367
NC_012947:3231893:3247313324731332484761164Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase1e-100365
NC_012967:531000:5369295369295380921164Escherichia coli B str. REL606 chromosome, complete genomeputative integrase1e-100365
NC_011094:593100:6007016007016018641164Salmonella enterica subsp. enterica serovar Schwarzengrund strprophage DLP12 integrase4e-100363
NC_011205:609464:6170646170646182271164Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853prophage DLP12 integrase5e-100363
NC_013282:1200993:1204148120414812053111164Cronobacter turicensis, complete genomeProphage DLP12 integrase8e-99359
NC_020418:3133831:3146831314683131479941164Morganella morganii subsp. morganii KT, complete genomeintegrase4e-92337
NC_020418:2084937:2084937208493720860881152Morganella morganii subsp. morganii KT, complete genomePhage integrase1e-86319
NC_016845:1285435:1288374128837412895371164Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,site-specific recombinase, phage integrase family8e-81300
NC_011283:4212000:4229167422916742303301164Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase2e-80298
NC_012751:1538500:1538746153874615398911146Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeAPSE-2 prophage; integrase5e-69260
NC_009800:289000:2918312918312929911161Escherichia coli HS, complete genomesite-specific recombinase, phage integrase family1e-67256
NC_017328:303987:3104213104213115811161Shigella flexneri 2002017 chromosome, complete genomephage integrase family site-specific recombinase6e-67253
NC_008258:269806:2774612774612786211161Shigella flexneri 5 str. 8401, complete genomeputative integrase6e-67253
NC_014306:1286248:129230312923031293148846Erwinia billingiae Eb661, complete genomesimilar to prophage integrase8e-48190
NC_015731:3274739:3293661329366132946981038Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein2e-43175
NC_016809:389561:4020064020064030491044Haemophilus influenzae 10810, complete genomeDLP12 prophage integrase1e-34146
NC_007298:1129889:1137870113787011388861017Dechloromonas aromatica RCB, complete genomePhage integrase1e-28126
NC_007520:903799:9043479043479053721026Thiomicrospira crunogena XCL-2, complete genomePhage integrase3e-28125
NC_015731:2148517:2150716215071621518041089Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein4e-26118
NC_012724:1308000:1310925131092513119921068Burkholderia glumae BGR1 chromosome 1, complete genomeProphage integrase9e-22103
NC_014922:825396:8292718292718302961026Haemophilus influenzae F3047 chromosome, complete genomeProphage integrase2e-21102
NC_012214:2805297:282140528214052822034630Erwinia pyrifoliae Ep1/96, complete genomephage integrase family, fragment5e-1788.2
NC_007759:2179000:2183062218306221841561095Syntrophus aciditrophicus SB, complete genomephage integrase family protein2e-1685.9
NC_010513:1162232:117499511749951175825831Xylella fastidiosa M12 chromosome, complete genomephage integrase2e-1582.4
NC_014355:1223243:1233478123347812345481071Candidatus Nitrospira defluvii, complete genomeputative integrase1e-1273.6
NC_016812:258500:2644322644322655201089Sinorhizobium fredii HH103, complete genomehypothetical protein5e-1271.6
NC_011989:594353:6107606107606117911032Agrobacterium vitis S4 chromosome 1, complete sequenceIntegrase9e-1270.5
NC_014355:243543:2579012579012590221122Candidatus Nitrospira defluvii, complete genomephage integrase3e-1168.9
NC_014355:288000:2962442962442972841041Candidatus Nitrospira defluvii, complete genomeputative phage integrase1e-1066.6
NC_009567:904922:924429924429925310882Haemophilus influenzae PittGG chromosome, complete genomehypothetical protein2e-0963.2
NC_014733:1573171:1573171157317115741871017Methylovorus sp. MP688 chromosome, complete genomeintegrase family protein4e-0858.5
NC_007434:1809946:1853156185315618541751020Burkholderia pseudomallei 1710b chromosome I, complete sequenceprobable site-specific2e-0756.6
NC_015388:1020747:102930310293031030148846Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeintegrase family protein3e-0755.8
NC_008702:2039462:2046178204617820472541077Azoarcus sp. BH72, complete genomesite-specific recombinase, phage integrase family5e-0755.1
NC_013722:3117442:3131487313148731325811095Xanthomonas albilineans, complete genomeputative shufflon-specific dna recombinase protein1e-0653.9
NC_004463:925140:940715940715941704990Bradyrhizobium japonicum USDA 110, complete genomeprobable site-specific integrase/recombinase2e-0652.8
NC_008825:564392:5822395822395832431005Methylibium petroleiphilum PM1, complete genomehypothetical protein2e-0652.8
NC_008380:4968492:497566649756664976619954Rhizobium leguminosarum bv. viciae 3841, complete genomeputative shufflon-specific DNA recombinase2e-0652.8
NC_010511:3106418:3119432311943231204481017Methylobacterium sp. 4-46 chromosome, complete genomeintegrase family protein2e-0652.4
NC_012880:3529017:3548469354846935495931125Dickeya dadantii Ech703, complete genomeintegrase family protein3e-0652.4