Pre_GI Gene

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Host: NC_011989 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_011989:594353 Agrobacterium vitis S4 chromosome 1, complete sequence

Host Lineage: Agrobacterium vitis; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Agrobacterium vitis is the causative agent of crown gall disease in grapes. Agrobacterium are Gram-negative, motile, soil-dwelling plant pathogens with the species name given based on the disease phenotype associated with the bacteria. Disease causing Agrobacterium spp. possess a tumor-inducing (Ti) plasmid, which carries genes for the formation of opines. A segment of the Ti plasmid gets transferred to the plant cell and integrates into the host cell genome. The plant cell then starts synthesizing opines, which can be catabolized by Agrobacterium spp, but not by the plant cells.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
5943535959661614transposaseQuickGO ontologyBLASTP
595963596295333hypothetical proteinBLASTP
596548596751204ISL3 family transposaseQuickGO ontologyBLASTP
5967935988742082subtilisin-like serine proteaseQuickGO ontologyBLASTP
598862599650789peptidase S1 chymotrypsin family proteinQuickGO ontologyBLASTP
600364600570207transcriptional regulator proteinQuickGO ontologyBLASTP
601327601914588hypothetical protein
602223602606384nucleic acid-binding proteinQuickGO ontologyBLASTP
602603602803201hypothetical proteinBLASTP
6042116074263216phosphohydrolaseQuickGO ontologyBLASTP
607855608529675chromosome partitioning proteinQuickGO ontologyBLASTP
6107606117911032IntegraseQuickGO ontologyBLASTP
6120936133401248Capsule polysaccharide export proteinQuickGO ontologyBLASTP
613398614051654cell surface polysaccharide export ABC-2 transporter ATP-binding proteinQuickGO ontologyBLASTP
6140546153011248capsule polysaccharide export inner-membrane proteinQuickGO ontologyBLASTP