Pre_GI: OUP Neighbours

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Query: NC_010067:171053 Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete

D: 31.5722

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This subspecies (IIIa) is usually found associated with reptiles, although contact with infected animals can result in the spread of the organism to humans or animals such as turkeys. This strain was originally isolated from a cornsnake in 1986 in Oregon, USA. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

Number of Neighbours: 42




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_005810:4469156Yersinia pestis biovar Microtus str. 91001, complete genome75.2757 %Subject ←→ Query29.5112
NC_015663:1934863Enterobacter aerogenes KCTC 2190 chromosome, complete genome75.9712 %Subject ←→ Query30.6937
NC_004631:2755306Salmonella enterica subsp. enterica serovar Typhi Ty2, complete88.3793 %Subject ←→ Query30.7575
NC_013282:646569Cronobacter turicensis, complete genome75.6771 %Subject ←→ Query30.8062
NC_003198:2769449Salmonella enterica subsp. enterica serovar Typhi str. CT18,88.3793 %Subject ←→ Query31.0494
NC_006511:3759550Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.1409 %Subject ←→ Query31.1345
NC_015663:4447984Enterobacter aerogenes KCTC 2190 chromosome, complete genome79.0962 %Subject ←→ Query31.6444
NC_013282:3719500*Cronobacter turicensis, complete genome79.3842 %Subject ←→ Query31.6817
NC_010102:2881714Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,87.4265 %Subject ←→ Query32.0373
NC_010102:3919999Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,75.144 %Subject ←→ Query32.0708
NC_014500:3519722Dickeya dadantii 3937 chromosome, complete genome77.7114 %Subject ←→ Query32.164
NC_012912:1229333Dickeya zeae Ech1591, complete genome75.1287 %Subject ←→ Query32.2592
NC_012880:3645304Dickeya dadantii Ech703, complete genome75.1501 %Subject ←→ Query33.3293
NC_013716:1756545*Citrobacter rodentium ICC168, complete genome77.739 %Subject ←→ Query33.4286
NC_010102:283364*Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,76.9577 %Subject ←→ Query33.8947
NC_012912:777592*Dickeya zeae Ech1591, complete genome76.106 %Subject ←→ Query33.9737
NC_012779:3316877Edwardsiella ictaluri 93-146, complete genome75.9835 %Subject ←→ Query34.9445
NC_009778:1902995Enterobacter sakazakii ATCC BAA-894, complete genome76.4154 %Subject ←→ Query35.1593
NC_010694:614985Erwinia tasmaniensis, complete genome78.0607 %Subject ←→ Query35.5876
NC_010067:3753971Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete76.5748 %Subject ←→ Query35.7065
NC_006905:3942753Salmonella enterica subsp. enterica serovar Choleraesuis str76.5533 %Subject ←→ Query35.749
NC_010067:632683Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete77.9442 %Subject ←→ Query35.8098
NC_012779:2424967*Edwardsiella ictaluri 93-146, complete genome75.2696 %Subject ←→ Query35.992
NC_006511:682863*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC75.9743 %Subject ←→ Query36.3874
NC_011080:2789744*Salmonella enterica subsp. enterica serovar Newport str. SL254,76.4737 %Subject ←→ Query36.512
NC_012880:2778795Dickeya dadantii Ech703, complete genome75.2359 %Subject ←→ Query36.5333
NC_011149:361765Salmonella enterica subsp. enterica serovar Agona str. SL483,83.0821 %Subject ←→ Query36.5643
NC_009778:3454790Enterobacter sakazakii ATCC BAA-894, complete genome79.3352 %Subject ←→ Query36.7583
NC_011080:383441Salmonella enterica subsp. enterica serovar Newport str. SL254,82.6777 %Subject ←→ Query37.0114
NC_014500:2934232*Dickeya dadantii 3937 chromosome, complete genome75.6863 %Subject ←→ Query37.5286
NC_011149:2040396Salmonella enterica subsp. enterica serovar Agona str. SL483,76.4399 %Subject ←→ Query37.9381
NC_014500:1646854*Dickeya dadantii 3937 chromosome, complete genome76.7279 %Subject ←→ Query37.9513
NC_003198:2703013*Salmonella enterica subsp. enterica serovar Typhi str. CT18,75.6771 %Subject ←→ Query38.1505
NC_013716:4824541*Citrobacter rodentium ICC168, complete genome75.8762 %Subject ←→ Query38.2235
NC_006511:3364448*Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC78.8909 %Subject ←→ Query38.4606
NC_013282:1256769Cronobacter turicensis, complete genome79.375 %Subject ←→ Query38.8742
NC_011080:3941909Salmonella enterica subsp. enterica serovar Newport str. SL254,75.6373 %Subject ←→ Query39.4334
NC_006905:2805877*Salmonella enterica subsp. enterica serovar Choleraesuis str76.9853 %Subject ←→ Query39.786
NC_013282:3216226*Cronobacter turicensis, complete genome76.1213 %Subject ←→ Query41.2788
NC_009648:293052*Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome80.7016 %Subject Query43.5401
NC_013508:2356865*Edwardsiella tarda EIB202, complete genome76.5625 %Subject Query44.5077
NC_009778:3832000Enterobacter sakazakii ATCC BAA-894, complete genome76.5074 %Subject Query45.4902