Pre_GI: BLASTP Hits

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Query: NC_012660:2045398:2084638 Pseudomonas fluorescens SBW25 chromosome, complete genome

Start: 2084638, End: 2085786, Length: 1149

Host Lineage: Pseudomonas fluorescens; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Isolated in 1989 from the leaf surface of a sugar beet plant grown at the University Farm, Wytham, Oxford, UK. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is a nonpathogenic saprophyte which inhabits soil, water and plant surface environments. If iron is in low supply, it produces a soluble, greenish fluorescent pigment, which is how it was named. As these environmentally versatile bacteria possess the ability to degrade (at least partially) multiple different pollutants, they are studied in their use as bioremediants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007086:2887875:2939736293973629409231188Xanthomonas campestris pv. campestris str. 8004, complete genomeRNA-directed DNA polymerase1e-83310
NC_010334:609636:6242056242056253471143Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase3e-65249
NC_012918:928903:9532789532789544111134Geobacter sp. M21 chromosome, complete genomeRNA-directed DNA polymerase4e-63242
NC_008786:1298817:1309683130968313108311149Verminephrobacter eiseniae EF01-2, complete genomeRNA-directed DNA polymerase2e-62239
NC_002939:1480474:1491977149197714931191143Geobacter sulfurreducens PCA, complete genomeRNA-directed DNA polymerase6e-62238
NC_020260:603796:623334623334624089756Cronobacter sakazakii Sp291, complete genomeRNA-directed DNA polymerase2e-48193
NC_015496:3256372:3267584326758432686031020Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRNA-directed DNA polymerase2e-35149
NC_009659:892272:9039629039629049751014Janthinobacterium sp. Marseille chromosome, complete genomeRNA-directed DNA polymerase8e-35148
NC_012691:779826:7885707885707896011032Tolumonas auensis DSM 9187, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)4e-34145
NC_010334:609636:620220620220621074855Shewanella halifaxensis HAW-EB4, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)9e-29128
NC_007347:1:687068707844975Ralstonia eutropha JMP134 chromosome 1, complete sequenceRNA-directed DNA polymerase2e-28126
NC_013194:1955582:1969326196932619707621437Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein9e-27121
NC_007645:6858465:6858465685846568597991335Hahella chejuensis KCTC 2396, complete genomeRetron-type reverse transcriptase4e-25115
NC_012947:2898179:290244829024482903410963Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRNA-directed DNA polymerase2e-24113
NC_020304:3029243:303402230340223034798777Desulfocapsa sulfexigens DSM 10523, complete genomeRetron-type reverse transcriptase9e-23108
NC_011750:4307166:4329863432986343310261164Escherichia coli IAI39 chromosome, complete genomeputative retron-type reverse transcriptase1e-22107
NC_012880:3982383:399147739914773992475999Dickeya dadantii Ech703, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)6e-22105
NC_011601:4036590:406150440615044062463960Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeRNA-directed DNA polymerase8e-22105
NC_015510:4674774:4680972468097246832302259Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeRNA-directed DNA polymerase1e-21104
NC_017191:3901914:3912193391219339139561764Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA-directed DNA polymerase3e-21102
NC_017188:3900951:3910501391050139122641764Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA-directed DNA polymerase3e-21102
NC_021066:3201500:321332732133273214196870Raoultella ornithinolytica B6, complete genomehypothetical protein6e-21102
NC_015164:2473496:2477601247760124790611461Bacteroides salanitronis DSM 18170 chromosome, complete genomeRNA-directed DNA polymerase3e-2099.8
NC_010688:673454:6822916822916839851695Xanthomonas campestris pv. campestris, complete genomeRNA-directed DNA polymerase4e-2099.4
NC_013456:2984491:298688029868802987845966Vibrio sp. Ex25 chromosome 1, complete genomeputative reverse transcriptase3e-1996.3
NC_003911:1078949:109420510942051095173969Silicibacter pomeroyi DSS-3, complete genomeRNA-dependent DNA polymerase, putative5e-1995.5
NC_011206:262844:277816277816278763948Acidithiobacillus ferrooxidans ATCC 53993, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)2e-1893.6
NC_013406:303218:3125503125503142201671Paenibacillus sp. Y412MC10 chromosome, complete genomeRNA-directed DNA polymerase2e-1790.1
NC_008570:2216736:224228322422832243191909Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeputative RNA-dependent DNA polymerase4e-1685.9
NC_012108:2159230:217027321702732171157885Desulfobacterium autotrophicum HRM2, complete genomeRNA-directed DNA polymerase (retron-type reverse transcriptase)4e-1685.9
NC_009973:178000:2176542176542194081755Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeRNA-directed DNA polymerase7e-1685.1
NC_011883:2826000:2832835283283528346191785Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,RNA-directed DNA polymerase2e-1583.6
NC_010501:3987615:4002391400239140035151125Pseudomonas putida W619, complete genomeRNA-directed DNA polymerase (reverse transcriptase)3e-1583.2
NC_018012:1789028:180004918000491801002954Thiocystis violascens DSM 198 chromosome, complete genomeRetron-type reverse transcriptase5e-1582.4
NC_015635:5222000:523243052324305233401972Microlunatus phosphovorus NM-1, complete genomeputative RNA-directed DNA polymerase6e-1582
NC_007606:3784847:380768838076883808197510Shigella dysenteriae Sd197, complete genomeputative RNA-directed DNA polymerase, msDNA specific7e-1478.6
NC_012880:2778795:278747227874722788422951Dickeya dadantii Ech703, complete genomereverse transcriptase8e-1478.6
NC_002516:776787:785969785969786925957Pseudomonas aeruginosa PAO1, complete genomehypothetical protein4e-1376.3
NC_007963:1370903:1378303137830313793341032Chromohalobacter salexigens DSM 3043, complete genomeRNA-directed DNA polymerase (Reverse transcriptase)1e-1274.7
NC_016026:2082500:2097240209724020990481809Micavibrio aeruginosavorus ARL-13 chromosome, complete genomereverse transcriptase family protein3e-1273.2
NC_014562:983398:997923997923998909987Pantoea vagans C9-1 chromosome, complete genomehypothetical protein1e-1171.6
NC_014323:3292082:3299680329968033007141035Herbaspirillum seropedicae SmR1 chromosome, complete genomeretron reverse transcriptase2e-1170.1
NC_015976:2900891:291120929112092912144936Sphingobium sp. SYK-6, complete genomeputative RNA-directed DNA polymerase2e-1170.1
NC_013421:1505176:151274715127471513718972Pectobacterium wasabiae WPP163, complete genomeretron reverse transcriptase3e-1170.1
NC_010688:3030873:306024630602463061202957Xanthomonas campestris pv. campestris, complete genomeputative reverse transcriptase4e-1169.3
NC_008313:2685531:270267527026752703667993Ralstonia eutropha H16 chromosome 1, complete sequencereverse transcriptase (RNA-dependent DNA polymerase)8e-1168.6
NC_016944:2588435:259596425959642596911948Vibrio cholerae IEC224 chromosome I, complete sequenceRNA-directed DNA polymerase2e-1067
NC_002505:2537655:254964225496422550613972Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeRNA-directed DNA polymerase2e-1067
NC_009457:2095366:210287421028742103845972Vibrio cholerae O395 chromosome 2, complete sequenceRNA-directed DNA polymerase2e-1067
NC_012578:2479150:248665824866582487629972Vibrio cholerae M66-2 chromosome I, complete sequenceRNA-directed DNA polymerase2e-1067
NC_012582:2626786:263429426342942635265972Vibrio cholerae O395 chromosome chromosome I, complete sequenceRNA-directed DNA polymerase2e-1067
NC_012668:1036000:104405310440531045024972Vibrio cholerae MJ-1236 chromosome 1, complete sequencereverse transcriptase2e-1067
NC_016445:2012294:201979920197992020770972Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completeRNA-directed DNA polymerase2e-1067
NC_016818:1795576:1804158180415818059991842Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completereverse transcriptase3e-1066.6
NC_014837:33014:4546245462464751014Pantoea sp. At-9b chromosome, complete genomeRNA-directed DNA polymerase4e-1065.9
NC_016620:781995:784689784689785654966Bacteriovorax marinus SJ, complete genomereverse transcriptase1e-0964.7
NC_004578:4432983:4443121444312144443021182Pseudomonas syringae pv. tomato str. DC3000, complete genomeretron reverse transcriptase8e-0961.6
NC_013440:1190832:1204684120468412063901707Haliangium ochraceum DSM 14365, complete genomeRibonuclease H1e-0861.2
NC_014910:242845:2767302767302777581029Alicycliphilus denitrificans BC chromosome, complete genomeretron reverse transcriptase9e-0858.2
NC_013961:73037:834488344884434987Erwinia amylovora, complete genomeputative retron reverse transcriptase1e-0757.8
NC_004193:79588:8221182211834701260Oceanobacillus iheyensis HTE831, complete genomerecombinase for Bh.Int5e-0755.8
NC_005139:1784000:1817712181771218188571146Vibrio vulnificus YJ016 chromosome I, complete sequenceretron-type reverse transcriptase3e-0653.1