Pre_GI: BLASTP Hits

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Query: NC_010658:3774110:3797949 Shigella boydii CDC 3083-94, complete genome

Start: 3797949, End: 3798590, Length: 642

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:4427000:444893144489314449572642Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeOrotate phosphoribosyltransferase2e-121434
NC_013364:4460500:448252844825284483169642Escherichia coli O111:H- str. 11128, complete genomeorotate phosphoribosyltransferase2e-121434
NC_013008:4595043:461813146181314618772642Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeorotate phosphoribosyltransferase2e-121434
NC_011353:4639002:466209046620904662731642Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeorotate phosphoribosyltransferase2e-121434
NC_002655:4606000:462796946279694628610642Escherichia coli O157:H7 EDL933, complete genomeorotate phosphoribosyltransferase2e-121434
NC_007613:3637832:366072536607253661366642Shigella boydii Sb227, complete genomeorotate phosphoribosyltransferase2e-121434
NC_002695:4537000:455898645589864559627642Escherichia coli O157:H7 str. Sakai, complete genomeorotate phosphoribosyltransferase2e-121434
NC_009801:4108179:413106341310634131704642Escherichia coli E24377A, complete genomeorotate phosphoribosyltransferase7e-121432
CP002185:3998112:402099640209964021637642Escherichia coli W, complete genomeorotate phosphoribosyltransferase7e-121432
NC_011415:4040211:406331740633174063958642Escherichia coli SE11 chromosome, complete genomeorotate phosphoribosyltransferase7e-121432
NC_008563:4083558:410645141064514107107657Escherichia coli APEC O1, complete genomeorotate phosphoribosyltransferase2e-120431
NC_011742:3998285:402117840211784021819642Escherichia coli S88 chromosome, complete genomeorotate phosphoribosyltransferase2e-120431
NC_009800:3821824:384470838447083845349642Escherichia coli HS, complete genomeorotate phosphoribosyltransferase1e-120431
CU928145:4167043:419014941901494190790642Escherichia coli 55989 chromosome, complete genomeorotate phosphoribosyltransferase1e-120431
NC_000913:3786124:381315038131503813791642Escherichia coli K12, complete genomeorotate phosphoribosyltransferase1e-120431
NC_008253:3896704:391959739195973920238642Escherichia coli 536, complete genomeorotate phosphoribosyltransferase1e-120431
NC_011751:4251296:427440542744054275046642Escherichia coli UMN026 chromosome, complete genomeorotate phosphoribosyltransferase1e-120431
NC_011748:4167043:419014941901494190790642Escherichia coli 55989, complete genomeorotate phosphoribosyltransferase1e-120431
NC_010473:3883701:391072739107273911368642Escherichia coli str. K-12 substr. DH10B, complete genomeorotate phosphoribosyltransferase1e-120431
NC_011745:4226186:424929142492914249932642Escherichia coli ED1a chromosome, complete genomeorotate phosphoribosyltransferase1e-120431
NC_012759:3675396:370147637014763702117642Escherichia coli BW2952 chromosome, complete genomeorotate phosphoribosyltransferase1e-120431
NC_004337:3590323:378544137854413786082642Shigella flexneri 2a str. 301, complete genomeorotate phosphoribosyltransferase1e-119429
NC_004337:3761865:378544137854413786082642Shigella flexneri 2a str. 301, complete genomeorotate phosphoribosyltransferase1e-119429
NC_017328:3794105:381764138176413818282642Shigella flexneri 2002017 chromosome, complete genomeorotate phosphoribosyltransferase1e-119429
NC_006905:3845000:386825938682593868900642Salmonella enterica subsp. enterica serovar Choleraesuis strorotate phosphoribosyltransferase7e-117419
NC_010102:3851500:387490638749063875547642Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein7e-117419
NC_003197:3902500:392595939259593926600642Salmonella typhimurium LT2, complete genomeorotate phosphoribosyltransferase7e-117419
NC_011083:3915500:393896939389693939610642Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,orotate phosphoribosyltransferase7e-117419
NC_011080:3875320:389911038991103899751642Salmonella enterica subsp. enterica serovar Newport str. SL254,orotate phosphoribosyltransferase7e-117419
NC_011094:3778000:380204538020453802686642Salmonella enterica subsp. enterica serovar Schwarzengrund strorotate phosphoribosyltransferase7e-117419
NC_011205:3942500:396566039656603966301642Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853orotate phosphoribosyltransferase7e-117419
NC_011294:3782655:380706338070633807704642Salmonella enterica subsp. enterica serovar Enteritidis strorotate phosphoribosyltransferase7e-117419
NC_012125:3840000:386311238631123863753642Salmonella enterica subsp. enterica serovar Paratyphi C strainorotate phosphoribosyltransferase7e-117419
NC_017046:3923000:394610039461003946741642Salmonella enterica subsp. enterica serovar Typhimurium str. 798orotate phosphoribosyltransferase7e-117419
NC_016863:3864000:388725838872583887899642Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1orotate phosphoribosyltransferase7e-117419
NC_016860:3925500:394885539488553949496642Salmonella enterica subsp. enterica serovar Typhimurium strorotate phosphoribosyltransferase7e-117419
NC_016857:3924000:394727439472743947915642Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74orotate phosphoribosyltransferase7e-117419
NC_016856:3916500:393965139396513940292642Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sorotate phosphoribosyltransferase7e-117419
NC_016810:3923988:394727339472733947914642Salmonella enterica subsp. enterica serovar Typhimurium strorotate phosphoribosyltransferase7e-117419
NC_011149:3822000:384532638453263845967642Salmonella enterica subsp. enterica serovar Agona str. SL483,orotate phosphoribosyltransferase2e-116417
NC_015761:3611993:363581336358133636454642Salmonella bongori NCTC 12419, complete genomeorotate phosphoribosyltransferase4e-116417
NC_009792:4658909:468045046804504681106657Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-115414
NC_006511:3690828:371461837146183715259642Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCorotate phosphoribosyltransferase7e-115412
NC_011147:3686500:371028837102883710929642Salmonella enterica subsp. enterica serovar Paratyphi A strorotate phosphoribosyltransferase7e-115412
NC_009648:4359875:436431243643124364953642Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeorotate phosphoribosyltransferase1e-113409
NC_016845:5162481:516619151661915166832642Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,orotate phosphoribosyltransferase4e-113407
NC_012731:5074000:507849150784915079243753Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeorotate phosphoribosyltransferase6e-113406
NC_011283:105245:117559117559118200642Klebsiella pneumoniae 342 chromosome, complete genomeorotate phosphoribosyltransferase1e-112405
NC_013850:109500:122755122755123396642Klebsiella variicola At-22 chromosome, complete genomeorotate phosphoribosyltransferase1e-112405
NC_020064:4751097:475109747510974751738642Serratia marcescens FGI94, complete genomeorotate phosphoribosyltransferase2e-110397
NC_013421:4790696:481555848155584816199642Pectobacterium wasabiae WPP163, complete genomeorotate phosphoribosyltransferase5e-108390
NC_013971:73037:9938199381100022642Erwinia amylovora ATCC 49946 chromosome, complete genomeorotate phosphoribosyltransferase9e-108389
NC_013961:73037:9938199381100022642Erwinia amylovora, complete genomeOrotate phosphoribosyltransferase9e-108389
NC_010694:63654:819618196182602642Erwinia tasmaniensis, complete genomeOrotate phosphoribosyltransferase (OPRTase)2e-103374
NC_013456:212150:215154215154215795642Vibrio sp. Ex25 chromosome 1, complete genomeorotate phosphoribosyltransferase3e-103374
NC_016816:127802:143183143183143824642Pantoea ananatis LMG 5342, complete genomeorotate phosphoribosyltransferase5e-103373
NC_008700:367949:388412388412389053642Shewanella amazonensis SB2B, complete genomeOrotate phosphoribosyltransferase1e-99362
NC_008577:4533574:453657145365714537218648Shewanella sp. ANA-3 chromosome 1, complete sequenceorotate phosphoribosyltransferase2e-97354
NC_007954:334795:358537358537359178642Shewanella denitrificans OS217, complete genomeorotate phosphoribosyltransferase2e-94345
NC_016602:173314:176416176416176928513Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceorotate phosphoribosyltransferase5e-81300
NC_007963:3553678:357160535716053572309705Chromohalobacter salexigens DSM 3043, complete genomeorotate phosphoribosyltransferase5e-75280
NC_008340:277223:292213292213292872660Alkalilimnicola ehrlichei MLHE-1, complete genomeorotate phosphoribosyltransferase2e-70265
NC_014532:3967463:396746339674633968155693Halomonas elongata DSM 2581, complete genomeorotate phosphoribosyltransferase3e-67254
NC_010717:4851000:487079948707994871500702Xanthomonas oryzae pv. oryzae PXO99A, complete genomeorotate phosphoribosyltransferase5e-53207
NC_004556:151593:155324155324155983660Xylella fastidiosa Temecula1, complete genomeorotate phosphoribosyltransferase8e-51199
NC_010577:151926:155176155176155835660Xylella fastidiosa M23, complete genomeorotate phosphoribosyltransferase1e-50199
NC_003919:4568892:458949845894984590157660Xanthomonas axonopodis pv. citri str. 306, complete genomeorotate phosphoribosyltransferase3e-50197
NC_007508:4593446:461400246140024614661660Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeorotate phosphoribosyltransferase1e-49196
NC_014828:2657623:267661226766122677295684Ethanoligenens harbinense YUAN-3 chromosome, complete genomeorotate phosphoribosyltransferase4e-44177
NC_014500:4049384:406358040635804064221642Dickeya dadantii 3937 chromosome, complete genomeOrotate phosphoribosyltransferase1e-35149
NC_011529:1375920:138877813887781389335558Thermococcus onnurineus NA1, complete genomeorotate phosphoribosyltransferase6e-1477.8
NC_003106:1457802:147967814796781480265588Sulfolobus tokodaii str. 7, complete genomeorotate phosphoribosyltransferase1e-1273.2
NC_018876:1061682:107871010787101079246537Methanolobus psychrophilus R15 chromosome, complete genomeorotate phosphoribosyltransferase1e-1272.8
NC_007681:1157402:118151611815161182052537Methanosphaera stadtmanae DSM 3091, complete genomePyrE2e-1272.8
NC_008148:2290806:231447623144762315012537Rubrobacter xylanophilus DSM 9941, complete genomeorotate phosphoribosyltransferase7e-1270.9
NC_015315:416140:437668437668438249582Thermoproteus uzoniensis 768-20 chromosome, complete genomeorotate phosphoribosyltransferase9e-1167
NC_012589:1502390:150467315046731505260588Sulfolobus islandicus L.S.2.15, complete genomeorotate phosphoribosyltransferase2e-1065.9
NC_012623:1141951:116345911634591164046588Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeorotate phosphoribosyltransferase2e-1065.9
NC_012632:1518520:154111815411181541705588Sulfolobus islandicus M.16.27 chromosome, complete genomeorotate phosphoribosyltransferase2e-1065.9
NC_013769:1478546:150114415011441501731588Sulfolobus islandicus L.D.8.5 chromosome, complete genomeorotate phosphoribosyltransferase2e-1065.9
NC_017275:1436875:145947414594741460061588Sulfolobus islandicus HVE10/4 chromosome, complete genomeorotate phosphoribosyltransferase2e-1065.9
NC_002754:513790:535932535932536519588Sulfolobus solfataricus P2, complete genomeorotate phosphoribosyltransferase2e-1065.5
NC_013407:146000:165695165695166225531Methanocaldococcus vulcanius M7, complete genomeorotate phosphoribosyltransferase4e-0961.6
NC_015954:2873402:289333628933362893962627Halophilic archaeon DL31 chromosome, complete genomepyrE-like protein5e-0961.2
NC_014122:606000:625894625894626397504Methanocaldococcus infernus ME chromosome, complete genomeorotate phosphoribosyltransferase5e-0960.8
NC_017138:980696:996596996596997234639Bacillus megaterium WSH-002 chromosome, complete genomeOrotate phosphoribosyltransferase PyrE2e-0859.3
NC_014019:4094750:409652240965224097160639Bacillus megaterium QM B1551 chromosome, complete genomeorotate phosphoribosyltransferase2e-0858.9
NC_003212:1958500:196099419609941961623630Listeria innocua Clip11262, complete genomeorotate phosphoribosyltransferase4e-0858.2
NC_008555:1874878:188054118805411881170630Listeria welshimeri serovar 6b str. SLCC5334, complete genomeorotate phosphoribosyltransferase4e-0858.2
NC_003210:1904152:190659219065921907221630Listeria monocytogenes EGD-e, complete genomeorotate phosphoribosyltransferase4e-0858.2
NC_011660:724711:737001737001737630630Listeria monocytogenes HCC23 chromosome, complete genomeorotate phosphoribosyltransferase4e-0858.2
NC_014915:1080793:108242210824221083045624Geobacillus sp. Y412MC52 chromosome, complete genomeorotate phosphoribosyltransferase5e-0857.8
NC_013411:1941762:194247819424781943101624Geobacillus sp. Y412MC61, complete genomeorotate phosphoribosyltransferase5e-0857.8
NC_014471:1303634:130586713058671306454588Ignisphaera aggregans DSM 17230 chromosome, complete genomeorotate phosphoribosyltransferase5e-0857.8
NC_013768:1983711:199177419917741992403630Listeria monocytogenes 08-5923, complete genomeorotate phosphoribosyltransferase5e-0857.8
NC_002973:1877905:188596718859671886596630Listeria monocytogenes str. 4b F2365, complete genomeorotate phosphoribosyltransferase5e-0857.8
NC_019903:2806466:281052628105262811131606Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,orotate phosphoribosyltransferase6e-0857.4
NC_008312:577302:5785385785385800401503Trichodesmium erythraeum IMS101, complete genomeorotate phosphoribosyltransferase2e-0755.8
NC_007907:3230513:325088432508843251489606Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-0755.5
NC_013891:1861294:186477118647711865400630Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomehypothetical protein4e-0755.1
NC_014633:583858:592855592855593478624Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceorotate phosphoribosyltransferase5e-0754.7
NC_011830:4234392:426062342606234261228606Desulfitobacterium hafniense DCB-2, complete genomeorotate phosphoribosyltransferase5e-0754.7
NC_009633:4308016:431273943127394313320582Alkaliphilus metalliredigens QYMF chromosome, complete genomeorotate phosphoribosyltransferase1e-0653.1
NC_009483:2401209:242389024238902424438549Geobacter uraniireducens Rf4 chromosome, complete genomeorotate phosphoribosyltransferase2e-0652.8
NC_015660:2685842:270174627017462702369624Geobacillus thermoglucosidasius C56-YS93 chromosome, completeOrotate phosphoribosyltransferase2e-0652.4
NC_003450:2938404:295748329574832958037555Corynebacterium glutamicum ATCC 13032, complete genomeorotate phosphoribosyltransferase5e-0651.2
NC_006958:2911711:293078829307882931342555Corynebacterium glutamicum ATCC 13032, complete genomeorotate phosphoribosyltransferase5e-0651.2
NC_015216:652266:654608654608655132525Methanobacterium sp. AL-21 chromosome, complete genomeorotate phosphoribosyltransferase6e-0651.2
NC_015391:1248583:126310512631051263737633Carnobacterium sp. 17-4 chromosome, complete genomeorotate phosphoribosyltransferase6e-0650.8
NC_011725:3897450:390367939036793904311633Bacillus cereus B4264 chromosome, complete genomeorotate phosphoribosyltransferase8e-0650.4
NC_008319:262894:287284287284287853570Synechococcus sp. CC9311, complete genomeorotate phosphoribosyltransferase8e-0650.4