Pre_GI: BLASTP Hits

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Query: NC_010610:1385066:1410267 Lactobacillus fermentum IFO 3956, complete genome

Start: 1410267, End: 1410776, Length: 510

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014483:1973233:198132319813231981838516Paenibacillus polymyxa E681 chromosome, complete genomeProbable 16S rRNA processing protein rimM9e-44176
UCMB5137:1159520:117395711739571174481525Bacillus atrophaeus UCMB-513716S rRNA-processing protein RimM1e-42171
NC_011725:3862094:386209438620943862609516Bacillus cereus B4264 chromosome, complete genome16S rRNA-processing protein RimM1e-40165
NC_014171:3726054:374135437413543741869516Bacillus thuringiensis BMB171 chromosome, complete genome16S rRNA-processing protein1e-40165
NC_011772:3821917:382781238278123828327516Bacillus cereus G9842, complete genome16S rRNA processing protein RimM1e-40165
NC_017208:3816753:385748738574873858002516Bacillus thuringiensis serovar chinensis CT-43 chromosome, complete16S rRNA-processing protein1e-40165
NC_015391:1013608:102841710284171028932516Carnobacterium sp. 17-4 chromosome, complete genome16S rRNA-processing protein RimM2e-40164
NC_003909:3606177:363277136327713633286516Bacillus cereus ATCC 10987, complete genome16S rRNA-processing protein3e-40164
NC_014335:3589726:360822736082273608742516Bacillus cereus biovar anthracis str. CI chromosome, complete16S rRNA-processing protein3e-40164
NC_005945:3636321:365806836580683658583516Bacillus anthracis str. Sterne, complete genome16S rRNA-processing protein3e-40164
NC_005957:3665657:367904636790463679561516Bacillus thuringiensis serovar konkukian str. 97-27, complete16S rRNA-processing protein3e-40164
NC_011658:3603009:364541836454183645933516Bacillus cereus AH187 chromosome, complete genome16S rRNA-processing protein RimM3e-40164
NC_011969:3575988:358937935893793589894516Bacillus cereus Q1 chromosome, complete genome16S rRNA-processing protein rimm3e-40164
NC_016779:3621973:362270736227073623222516Bacillus cereus F837/76 chromosome, complete genome16S rRNA processing protein RimM3e-40164
NC_017200:3701043:370177737017773702292516Bacillus thuringiensis serovar finitimus YBT-020 chromosome,16S rRNA-processing protein RimM3e-40164
NC_006274:3736703:373792837379283738443516Bacillus cereus E33L, complete genome16S rRNA-processing protein4e-40163
NC_008600:3686135:368686936868693687450582Bacillus thuringiensis str. Al Hakam, complete genome16S rRNA processing protein4e-40163
NC_003997:3617000:365737336573733657888516Bacillus anthracis str. Ames, complete genome16S rRNA-processing protein9e-40162
NC_007530:3616828:365750036575003658015516Bacillus anthracis str. 'Ames Ancestor', complete genome16S rRNA-processing protein9e-40162
NC_012581:559182:580672580672581187516Bacillus anthracis str. CDC 684 chromosome, complete genome16S rRNA-processing protein RimM9e-40162
NC_012659:3617000:365740036574003657915516Bacillus anthracis str. A0248, complete genome16S rRNA-processing protein RimM9e-40162
NC_009848:1542978:155513015551301555654525Bacillus pumilus SAFR-032, complete genome16S rRNA processing protein1e-39161
NC_016605:1033000:103613110361311036640510Pediococcus claussenii ATCC BAA-344 chromosome, complete genome16S rRNA processing protein RimM1e-38158
NC_010184:3713359:371614737161473716662516Bacillus weihenstephanensis KBAB4, complete genome16S rRNA processing protein RimM2e-37154
NC_010382:1607013:162188916218891622404516Lysinibacillus sphaericus C3-41, complete genome16S rRNA-processing protein8e-36149
NC_020164:1590221:159678215967821597285504Staphylococcus warneri SG1, complete genome16S rRNA-processing protein RimM5e-31133
NC_018664:1699618:169961816996181700115498Clostridium acidurici 9a chromosome, complete genome16S rRNA processing protein RimM3e-29127
NC_011773:3689473:369226236922623692582321Bacillus cereus AH820 chromosome, complete genome16S rRNA processing protein RimM3e-24110
NC_013216:1219775:121977512197751220296522Desulfotomaculum acetoxidans DSM 771, complete genome16S rRNA processing protein RimM2e-21101
NC_015873:1193843:119618511961851196688504Megasphaera elsdenii DSM 20460, complete genomeribosome maturation factor rimM2e-2098.6
NC_011661:1542335:154643015464301546930501Dictyoglomus turgidum DSM 6724, complete genome16S rRNA processing protein RimM2e-1994.7
NC_011297:1357947:136204113620411362541501Dictyoglomus thermophilum H-6-12, complete genome16S rRNA processing protein RimM8e-1992.8
NC_014960:1735786:179166717916671792230564Anaerolinea thermophila UNI-1, complete genomeputative 16S rRNA-processing protein RimM8e-1889.7
NC_014654:1529500:153577615357761536297522Halanaerobium sp. 'sapolanicus' chromosome, complete genome16S rRNA processing protein RimM2e-1685.1
NC_009698:2420484:242345724234572423951495Clostridium botulinum A str. Hall chromosome, complete genome16S rRNA-processing protein RimM5e-1683.6
NC_009495:2571732:257909025790902579584495Clostridium botulinum A str. ATCC 3502 chromosome, complete genome16S rRNA-processing protein RimM5e-1683.6
NC_010520:2635750:264210826421082642602495Clostridium botulinum A3 str. Loch Maree, complete genome16S rRNA processing protein RimM1e-1582.8
NC_016109:5768000:576816657681665768798633Kitasatospora setae KM-6054, complete genome16S rRNA processing protein RimM1e-1582.4
NC_014328:1379437:139002913900291390517489Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative 16S rRNA processing protein7e-1580.1
NC_010572:2216309:223572222357222236318597Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative 16S rRNA processing protein2e-1478.2
NC_007516:124486:128246128246128779534Synechococcus sp. CC9605, complete genome16S rRNA-processing protein3e-1477.4
NC_007947:2447635:248869224886922489186495Methylobacillus flagellatus KT, complete genome16S rRNA processing protein RimM1e-1375.9
NC_017501:1750580:175331217533121753821510Neisseria meningitidis 8013, complete genomeputative 16S rRNA processing protein RimM4e-1373.9
NC_013016:500789:520602520602521111510Neisseria meningitidis alpha14 chromosome, complete genome16S rRNA-processing protein RimM7e-1373.2
NC_017514:1640355:164035516403551640837483Neisseria meningitidis M01-240149 chromosome, complete genome16S rRNA processing protein RimM7e-1373.2
NC_003112:603879:622365622365622874510Neisseria meningitidis MC58, complete genome16S rRNA-processing protein1e-1272.4
NC_017513:548882:567963567963568445483Neisseria meningitidis G2136 chromosome, complete genome16S rRNA processing protein RimM2e-1271.2
NC_017517:635235:652856652856653338483Neisseria meningitidis M01-240355 chromosome, complete genome16S rRNA processing protein RimM2e-1271.2
NC_016932:1414226:143307514330751433578504Corynebacterium pseudotuberculosis 316 chromosome, complete genomeribosome maturation factor rimM2e-1271.6
NC_008767:549351:565156565156565665510Neisseria meningitidis FAM18, complete genomeputative 16S rRNA processing protein3e-1271.2
NC_016584:4860360:487999748799974880494498Desulfosporosinus orientis DSM 765 chromosome, complete genome16S rRNA processing protein RimM3e-1271.2
NC_020291:1437431:144814214481421448639498Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeribosome maturation factor RimM5e-1270.5
NC_017515:1653306:166885016688501669359510Neisseria meningitidis M04-240196 chromosome, complete genome16S rRNA processing protein RimM6e-1270.1
NC_016782:1520324:153802215380221538522501Corynebacterium diphtheriae 241 chromosome, complete genome16S rRNA-processing protein RimM1e-1168.9
NC_016786:1519481:153828715382871538787501Corynebacterium diphtheriae HC01 chromosome, complete genome16S rRNA-processing protein RimM1e-1168.9
NC_017518:672790:694289694289694798510Neisseria meningitidis NZ-05/33 chromosome, complete genome16S rRNA processing protein RimM2e-1168.6
NC_016788:1509943:153305415330541533554501Corynebacterium diphtheriae HC04 chromosome, complete genome16S rRNA-processing protein RimM2e-1168.6
NC_002935:1534889:155258115525811553081501Corynebacterium diphtheriae NCTC 13129, complete genome16S rRNA-processing protein2e-1168.6
NC_016787:1509831:152958915295891530089501Corynebacterium diphtheriae HC03 chromosome, complete genome16S rRNA-processing protein RimM2e-1168.2
NC_014733:2363838:238886023888602389345486Methylovorus sp. MP688 chromosome, complete genome16S rRNA processing protein rimm3e-1167.8
NC_008319:171847:204839204839205402564Synechococcus sp. CC9311, complete genome16S rRNA processing protein RimM4e-1167.4
NC_012969:2476318:251996125199612520455495Methylovorus glucosetrophus SIP3-4 chromosome, complete genome16S rRNA processing protein RimM4e-1167.4
NC_011740:448000:469311469311469859549Escherichia fergusonii ATCC 35469, complete genome16S rRNA processing protein5e-1167
CP002516:1165726:118900611890061189554549Escherichia coli KO11, complete genome16S rRNA processing protein RimM5e-1167
NC_012947:1106000:112747211274721128020549Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete16S rRNA-processing protein RimM5e-1167
NC_016902:1165726:118900611890061189554549Escherichia coli KO11FL chromosome, complete genome16S rRNA processing protein RimM5e-1167
NC_020064:871338:875490875490876038549Serratia marcescens FGI94, complete genome16S rRNA processing protein RimM1e-1065.9
NC_008312:7099417:711473871147387115364627Trichodesmium erythraeum IMS101, complete genome16S rRNA processing protein RimM2e-1065.1
NC_014624:2668157:267255526725552673070516Eubacterium limosum KIST612 chromosome, complete genomeRimM protein2e-1065.1
NC_011884:5019500:505344750534475053989543Cyanothece sp. PCC 7425, complete genome16S rRNA processing protein RimM5e-1063.5
NC_014012:1097938:112116811211681121701534Shewanella violacea DSS12, complete genome16S rRNA processing protein RimM7e-1063.2
NC_009091:1514770:151968515196851520224540Prochlorococcus marinus str. MIT 9301, complete genomepossible 16S rRNA processing protein RimM1e-0962.4
NC_010995:1648897:166796716679671668503537Cellvibrio japonicus Ueda107, complete genome16S rRNA processing protein RimM2e-0961.6
NC_010003:335348:345978345978346535558Petrotoga mobilis SJ95, complete genome16S rRNA processing protein RimM3e-0961.2
NC_007645:1785000:179738317973831797904522Hahella chejuensis KCTC 2396, complete genome16S rRNA processing protein RimM3e-0960.8
NC_008710:703740:740797740797741297501Borrelia turicatae 91E135, complete genome16S rRNA processing protein RimM4e-0960.8
NC_011244:746801:755472755472755972501Borrelia recurrentis A1, complete genome16S rRNA-processing protein RimM2e-0858.5
NC_004663:2509433:252072825207282521267540Bacteroides thetaiotaomicron VPI-5482, complete genome16S rRNA-processing protein2e-0858.5
NC_011773:3689473:369257236925723692778207Bacillus cereus AH820 chromosome, complete genome16S rRNA processing protein RimM4e-0857.4
NC_016845:4077293:408640440864044086862459Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,16S rRNA-processing protein6e-0857
NC_014644:1363445:136593313659331366529597Gardnerella vaginalis ATCC 14019 chromosome, complete genome16S rRNA processing protein RimM9e-0856.2
NC_011565:620801:649820649820650335516Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,16S rRNA-processing protein RimM2e-0754.7
NC_010673:703816:743509743509744009501Borrelia hermsii DAH, complete genome16S rRNA processing protein RimM2e-0755.1
NC_018720:417500:435109435109435714606Bifidobacterium asteroides PRL2011 chromosome, complete genome16S rRNA-processing protein rimM4e-0754.3
NC_008817:1574506:157943915794391579978540Prochlorococcus marinus str. MIT 9515, complete genomepossible 16S rRNA processing protein RimM4e-0753.9
NC_009511:2921448:293969929396992940172474Sphingomonas wittichii RW1 chromosome, complete genome16S rRNA processing protein RimM7e-0753.1
NC_014643:2354507:237376323737632374401639Rothia dentocariosa ATCC 17931 chromosome, complete genome16S rRNA processing protein RimM2e-0651.6
NC_009257:226417:252351252351252860510Francisella tularensis subsp. tularensis WY96-3418 chromosome,16S rRNA-processing protein RimM5e-0650.4
NC_015732:529201:534981534981535493513Spirochaeta caldaria DSM 7334 chromosome, complete genomeRibosome maturation factor rimM6e-0650.1
NC_008369:1667437:166743716674371667946510Francisella tularensis subsp. holarctica OSU18, complete genome16S rRNA processing protein RimM7e-0650.1
NC_009749:1663500:166368816636881664197510Francisella tularensis subsp. holarctica FTA, complete genome16S rRNA processing protein RimM7e-0650.1
NC_007880:1667922:166792216679221668431510Francisella tularensis subsp. holarctica, complete genome16S rRNA processing protein rimM7e-0650.1