Pre_GI Gene

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Host: NC_014012 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_014012:1097938 Shewanella violacea DSS12, complete genome

Host Lineage: Shewanella violacea; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella violacea DSS12 was isolated from mud, taken at a depth of 5110 m, from the Ryukyu Trench in the Philippine Sea. Shewanella violacea is psychrophilic and barophilic, with an optimum growth temperature and pressure of 8 degrees C and 30 MPa, respectively. This organism is able to grow at pressures from 0.1 MPa to 70Mpa, however, no growth occurs a temperatures above 20 degrees C.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
109793811002472310toxin secretion ATP-binding proteinQuickGO ontologyBLASTP
110024411016531410HlyD family secretion proteinQuickGO ontologyBLASTP
110169311084966804RTX toxin putativeQuickGO ontologyBLASTP
11091741109719546hypothetical proteinBLASTP
11099181110889972metallo-beta-lactamase family proteinQuickGO ontologyBLASTP
111122211129341713metal-dependent hydrolase putativeQuickGO ontologyBLASTP
111296611146091644transmembrane efflux proteinQuickGO ontologyBLASTP
11146471115525879transcriptional regulator LysR familyQuickGO ontologyBLASTP
111663511179181284hemolysin protein putativeQuickGO ontologyBLASTP
11179351118120186hypothetical protein
11181331118921789hypothetical proteinBLASTP
111922711206001374signal recognition particle protein FfhQuickGO ontologyBLASTP
11208991121150252ribosomal protein S16QuickGO ontologyBLASTP
1121168112170153416S rRNA processing protein RimMQuickGO ontologyBLASTP
11217171122463747tRNA guanine-N1--methyltransferaseQuickGO ontologyBLASTP