Pre_GI: BLASTP Hits

Some Help

Query: NC_009708:633054:640556 Yersinia pseudotuberculosis IP 31758 chromosome, complete genome

Start: 640556, End: 641188, Length: 633

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is serotype 1b and was isolated in 1966 from the stools of a patient presenting with scarlet-like fever in the Primorski region of the former USSR. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010465:660207:667709667709668341633Yersinia pseudotuberculosis YPIII, complete genomeYheO domain protein1e-119428
NC_010634:4001154:401127940112794011911633Yersinia pseudotuberculosis PB1/+, complete genomeYheO domain-containing protein1e-119428
NC_006155:4062000:407107340710734071705633Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein1e-119428
NC_005810:3272765:328026732802673280890624Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein2e-106385
NC_008149:587689:598965598965599591627Yersinia pestis Nepal516, complete genomehypothetical protein2e-106384
NC_008150:3495851:350537935053793506005627Yersinia pestis Antiqua, complete genomehypothetical protein2e-106384
NC_009381:460358:469402469402470028627Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein2e-106384
NC_014029:729675:740944740944741570627Yersinia pestis Z176003 chromosome, complete genomehypothetical protein2e-106384
NC_017154:671816:683096683096683722627Yersinia pestis D106004 chromosome, complete genomehypothetical protein2e-106384
NC_017160:676249:685281685281685907627Yersinia pestis D182038 chromosome, complete genomehypothetical protein2e-106384
NC_017265:3790750:379784037978403798466627Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,hypothetical protein2e-106384
NC_010159:1071937:107824710782471078873627Yersinia pestis Angola, complete genome2e-106384
NC_003143:675622:687471687471688061591Yersinia pestis CO92, complete genomehypothetical protein2e-98358
NC_014328:3294086:331075033107503311400651Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein9e-33139
NC_018870:2479114:248606524860652486703639Thermacetogenium phaeum DSM 12270 chromosome, complete genomeYheO domain-containing protein3e-30131
NC_010718:1865992:186743818674381868103666Natranaerobius thermophilus JW/NM-WN-LF, complete genomeYheO domain protein1e-27123
NC_015873:380485:408787408787409494708Megasphaera elsdenii DSM 20460, complete genomeYheO-like protein2e-27122
NC_016047:2631511:264125326412532641912660Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeprotein DctR3e-25115
NC_006270:2657726:267016326701632670828666Bacillus licheniformis ATCC 14580, complete genomehypothetical DNA binding protein1e-24113
NC_006322:2658587:267102426710242671689666Bacillus licheniformis ATCC 14580, complete genomeDctR1e-24113
NC_014023:24000:256302563026292663Bacillus megaterium QM B1551 plasmid pBM700, complete sequencehypothetical protein2e-24112
NC_014639:1538782:155778115577811558431651Bacillus atrophaeus 1942 chromosome, complete genometranscriptional regulator2e-24112
CP002207:1538782:155778115577811558431651Bacillus atrophaeus 1942, complete genometranscriptional regulator2e-24112
NC_013385:90331:986709867099344675Ammonifex degensii KC4, complete genomeYheO domain protein2e-22105
NC_013093:2895511:289850528985052899167663Actinosynnema mirum DSM 43827, complete genomeYheO domain protein5e-22104
NC_015589:7678:174131741318183771Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeYheO-like domain-containing protein3e-22104
NC_015737:2050219:206413120641312064769639Clostridium sp. SY8519, complete genomehypothetical protein6e-22103
NC_013508:3387272:340979634097963410512717Edwardsiella tarda EIB202, complete genomeYheO domain protein1e-1996.3
NC_016818:362548:363672363672364394723Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completehypothetical protein4e-1994.7
NC_008309:1851189:186828118682811868949669Haemophilus somnus 129PT, complete genomehypothetical protein8e-1993.6
NC_010519:2033980:204929120492912049959669Haemophilus somnus 2336 chromosome, complete genomeYheO domain-containing protein8e-1993.6
NC_003143:1880000:190164819016481902325678Yersinia pestis CO92, complete genomeputative DNA-binding protein8e-1993.6
NC_005810:1976000:199793019979301998607678Yersinia pestis biovar Microtus str. 91001, complete genomeputative DNA-binding protein8e-1993.6
NC_017265:1715035:173808417380841738761678Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,putative DNA-binding protein8e-1993.6
NC_019908:2401577:241691724169172417570654Brachyspira pilosicoli P43/6/78 chromosome, complete genomehypothetical protein2e-1788.6
NC_018604:2253539:226632122663212266974654Brachyspira pilosicoli WesB complete genomeYheO domain protein2e-1788.6
NC_014330:768232:803531803531804184654Brachyspira pilosicoli 95/1000 chromosome, complete genomehypothetical protein2e-1788.6
NC_014323:292958:307957307957308613657Herbaspirillum seropedicae SmR1 chromosome, complete genomehypothetical protein4e-1788.2
NC_012225:47800:720617206172714654Brachyspira hyodysenteriae WA1, complete genomehypothetical protein containing PAS domain7e-1787.4
NC_017243:2190000:222037622203762221029654Brachyspira intermedia PWS/A chromosome, complete genomehypothetical protein2e-1685.5
NC_015138:201323:204550204550205182633Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeYheO-like domain-containing protein4e-1684.7
NC_018720:47984:533545335454181828Bifidobacterium asteroides PRL2011 chromosome, complete genomeYheO-like protein1e-1583.6
NC_020211:379000:392352392352392978627Serratia marcescens WW4, complete genomeputative DNA-binding protein1e-1583.2
NC_008752:166877:168138168138168770633Acidovorax avenae subsp. citrulli AAC00-1, complete genomeYheO domain protein1e-1582.8
NC_016642:1234500:123646212364621237160699Pseudovibrio sp. FO-BEG1 chromosome, complete genomeYheO domain-containing protein2e-1582.4
NC_014150:2994000:300882030088203009473654Brachyspira murdochii DSM 12563 chromosome, complete genomeYheO domain protein1e-1479.7
NC_006351:2759708:279517027951702795802633Burkholderia pseudomallei K96243 chromosome 2, complete sequencehypothetical protein5e-1477.8
NC_007511:1681764:168496116849611685599639Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein2e-1272.4
NC_002516:4321000:432494843249484325580633Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-0963.2
NC_008463:1188951:120005712000571200689633Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-0962.8