Pre_GI: BLASTN Hits

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Query: NC_009512:5166459 Pseudomonas putida F1, complete genome

Start: 5166459, End: 5193436, Length: 26978

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011992:1234610*1234610125759922990Acidovorax ebreus TPSY, complete genome4e-30141BLASTN svgBLASTP svg
NC_008782:2781229*2781229280258121353Acidovorax sp. JS42, complete genome4e-33151BLASTN svgBLASTP svg
NC_010170:4196197*4196197422572429528Bordetella petrii, complete genome6e-60240BLASTN svgBLASTP svg
NC_015376:662844*66284468656323720Burkholderia gladioli BSR3 chromosome chromosome 2, complete8e-0763.9BLASTN svgBLASTP svg
NC_009943:94083594083596563124797Candidatus Desulfococcus oleovorans Hxd3, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_010995:764567*76456778991125345Cellvibrio japonicus Ueda107, complete genome6e-51210BLASTN svgBLASTP svg
NC_009778:56700056700060530938310Enterobacter sakazakii ATCC BAA-894, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014306:43760124376012441784741836Erwinia billingiae Eb661, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_008563:2946391*2946391296667220282Escherichia coli APEC O1, complete genome2e-29139BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome1e-24123BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome4e-27131BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome4e-27131BLASTN svgBLASTP svg
AP010958:32387423238742326213723396Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-27131BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome4e-27131BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome4e-27131BLASTN svgBLASTP svg
NC_007946:29313642931364295051219149Escherichia coli UTI89, complete genome2e-29139BLASTN svgBLASTP svg
CP002185:2919752*2919752294461024859Escherichia coli W, complete genome4e-27131BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome4e-27131BLASTN svgBLASTP svg
NC_014394:3114648*3114648313404119394Gallionella capsiferriformans ES-2 chromosome, complete genome6e-125456BLASTN svgBLASTP svg
NC_010814:1441327*1441327149159950273Geobacter lovleyi SZ, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_011144:10739441073944109429420351Phenylobacterium zucineum HLK1, complete genome1e-24123BLASTN svgBLASTP svg
NC_007492:26293502629350265266523316Pseudomonas fluorescens PfO-1, complete genome2e-59238BLASTN svgBLASTP svg
NC_012660:33203303320330335044730118Pseudomonas fluorescens SBW25 chromosome, complete genome3e-37165BLASTN svgBLASTP svg
NC_002947:53864895386489541416727679Pseudomonas putida KT2440, complete genome04324BLASTN svgBLASTP svg
NC_015733:3923800*3923800394679722998Pseudomonas putida S16 chromosome, complete genome6e-23117BLASTN svgBLASTP svg
NC_015733:42539614253961427610922149Pseudomonas putida S16 chromosome, complete genome9e-1383.8BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome1e-42182BLASTN svgBLASTP svg
NC_015740:3631326*3631326366173930414Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete2e-69272BLASTN svgBLASTP svg
NC_007005:44113884411388444643035043Pseudomonas syringae pv. syringae B728a, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015677:12828651282865131149128627Ramlibacter tataouinensis TTB310 chromosome, complete genome1e-36163BLASTN svgBLASTP svg
NC_014034:14186811418681144488426204Rhodobacter capsulatus SB1003 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_011149:28298112829811285287123061Salmonella enterica subsp. enterica serovar Agona str. SL483,9e-1383.8BLASTN svgBLASTP svg
NC_006905:28576992857699289909341395Salmonella enterica subsp. enterica serovar Choleraesuis str9e-1383.8BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome2e-29139BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome2e-29139BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome4e-27131BLASTN svgBLASTP svg