Query: NC_009512:5166459 Pseudomonas putida F1, complete genome
Start: 5166459, End: 5193436, Length: 26978
Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_002947:5386489 | 5386489 | 5414167 | 27679 | Pseudomonas putida KT2440, complete genome | 0 | 4324 | BLASTN svg | BLASTP svg |
NC_014394:3114648* | 3114648 | 3134041 | 19394 | Gallionella capsiferriformans ES-2 chromosome, complete genome | 6e-125 | 456 | BLASTN svg | BLASTP svg |
NC_015740:3631326* | 3631326 | 3661739 | 30414 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 2e-69 | 272 | BLASTN svg | BLASTP svg |
NC_010170:4196197* | 4196197 | 4225724 | 29528 | Bordetella petrii, complete genome | 6e-60 | 240 | BLASTN svg | BLASTP svg |
NC_007492:2629350 | 2629350 | 2652665 | 23316 | Pseudomonas fluorescens PfO-1, complete genome | 2e-59 | 238 | BLASTN svg | BLASTP svg |
NC_010995:764567* | 764567 | 789911 | 25345 | Cellvibrio japonicus Ueda107, complete genome | 6e-51 | 210 | BLASTN svg | BLASTP svg |
NC_009434:3611738* | 3611738 | 3748875 | 137138 | Pseudomonas stutzeri A1501, complete genome | 1e-42 | 182 | BLASTN svg | BLASTP svg |
NC_012660:3320330 | 3320330 | 3350447 | 30118 | Pseudomonas fluorescens SBW25 chromosome, complete genome | 3e-37 | 165 | BLASTN svg | BLASTP svg |
NC_015677:1282865 | 1282865 | 1311491 | 28627 | Ramlibacter tataouinensis TTB310 chromosome, complete genome | 1e-36 | 163 | BLASTN svg | BLASTP svg |
NC_008782:2781229* | 2781229 | 2802581 | 21353 | Acidovorax sp. JS42, complete genome | 4e-33 | 151 | BLASTN svg | BLASTP svg |
NC_011992:1234610* | 1234610 | 1257599 | 22990 | Acidovorax ebreus TPSY, complete genome | 4e-30 | 141 | BLASTN svg | BLASTP svg |
NC_008563:2946391* | 2946391 | 2966672 | 20282 | Escherichia coli APEC O1, complete genome | 2e-29 | 139 | BLASTN svg | BLASTP svg |
NC_007946:2931364 | 2931364 | 2950512 | 19149 | Escherichia coli UTI89, complete genome | 2e-29 | 139 | BLASTN svg | BLASTP svg |
NC_004741:2741971* | 2741971 | 2764223 | 22253 | Shigella flexneri 2a str. 2457T, complete genome | 2e-29 | 139 | BLASTN svg | BLASTP svg |
NC_004337:2747917* | 2747917 | 2770961 | 23045 | Shigella flexneri 2a str. 301, complete genome | 2e-29 | 139 | BLASTN svg | BLASTP svg |
AC_000091:2747520* | 2747520 | 2802148 | 54629 | Escherichia coli W3110 DNA, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
AP010958:3238742 | 3238742 | 3262137 | 23396 | Escherichia coli O103:H2 str. 12009 DNA, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
CP002185:2919752* | 2919752 | 2944610 | 24859 | Escherichia coli W, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
NC_000913:2746886* | 2746886 | 2801514 | 54629 | Escherichia coli K12, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
NC_007384:2933625* | 2933625 | 2957709 | 24085 | Shigella sonnei Ss046, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
NC_010473:2839902* | 2839902 | 2889781 | 49880 | Escherichia coli str. K-12 substr. DH10B, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
NC_010498:2847359* | 2847359 | 2871659 | 24301 | Escherichia coli SMS-3-5, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
NC_011750:2928990* | 2928990 | 2969400 | 40411 | Escherichia coli IAI39 chromosome, complete genome | 4e-27 | 131 | BLASTN svg | BLASTP svg |
NC_011144:1073944 | 1073944 | 1094294 | 20351 | Phenylobacterium zucineum HLK1, complete genome | 1e-24 | 123 | BLASTN svg | BLASTP svg |
CU928160:2818750* | 2818750 | 2844902 | 26153 | Escherichia coli IAI1 chromosome, complete genome | 1e-24 | 123 | BLASTN svg | BLASTP svg |
NC_015733:3923800* | 3923800 | 3946797 | 22998 | Pseudomonas putida S16 chromosome, complete genome | 6e-23 | 117 | BLASTN svg | BLASTP svg |
NC_014306:4376012 | 4376012 | 4417847 | 41836 | Erwinia billingiae Eb661, complete genome | 1e-17 | 99.6 | BLASTN svg | BLASTP svg |
NC_006905:2857699 | 2857699 | 2899093 | 41395 | Salmonella enterica subsp. enterica serovar Choleraesuis str | 9e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_011149:2829811 | 2829811 | 2852871 | 23061 | Salmonella enterica subsp. enterica serovar Agona str. SL483, | 9e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_015733:4253961 | 4253961 | 4276109 | 22149 | Pseudomonas putida S16 chromosome, complete genome | 9e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_010814:1441327* | 1441327 | 1491599 | 50273 | Geobacter lovleyi SZ, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_009943:940835 | 940835 | 965631 | 24797 | Candidatus Desulfococcus oleovorans Hxd3, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_007005:4411388 | 4411388 | 4446430 | 35043 | Pseudomonas syringae pv. syringae B728a, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_014034:1418681 | 1418681 | 1444884 | 26204 | Rhodobacter capsulatus SB1003 chromosome, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015376:662844* | 662844 | 686563 | 23720 | Burkholderia gladioli BSR3 chromosome chromosome 2, complete | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_009778:567000 | 567000 | 605309 | 38310 | Enterobacter sakazakii ATCC BAA-894, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |