Pre_GI: BLASTP Hits

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Query: NC_007607:87000:108972 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 108972, End: 110180, Length: 1209

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007608:97092:1183971183971196051209Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase0822
NC_007606:3755155:3755155375515537563631209Shigella dysenteriae Sd197, complete genomeIS1294 ORF0821
NC_007608:97092:1146531146531158521200Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase0805
NC_007607:87000:1145111145111158031293Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS1294 transposase0797
NC_010660:175200:1954511954511966501200Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase0790
NC_004851:191709:2114272114272126231197Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS1294 transposase0740
NC_010660:175200:2009632009632021471185Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase0736
NC_017319:192482:211681211681212505825Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS1294 transposase4e-153541
NC_009837:92000:934139341394240828Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencetransposase6e-153540
NC_013364:1997891:2022346202234620235331188Escherichia coli O111:H- str. 11128, complete genomeputative IS91 transposase7e-64244
NC_004337:1783645:1802878180287818040651188Shigella flexneri 2a str. 301, complete genomeIS91 ORF8e-63241
NC_017328:1835108:1855376185537618566081233Shigella flexneri 2002017 chromosome, complete genomeIS91 ORF1e-62240
NC_004741:1823000:1839823183982318410431221Shigella flexneri 2a str. 2457T, complete genomeIS91 orf4e-62239
NC_008258:1784637:1802316180231618033891074Shigella flexneri 5 str. 8401, complete genomeIS91 ORF4e-57222
NC_014228:4360676:437700743770074377915909Xenorhabdus nematophila ATCC 19061, complete genometransposase (fragment)3e-54212
NC_007941:11319:269612696127227267Escherichia coli UTI89 plasmid pUTI89, complete sequencetransposase1e-43177
NC_019897:209523:2161202161202173671248Thermobacillus composti KWC4 chromosome, complete genometransposase4e-36152
NC_009837:92000:943039430394704402Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencehypothetical protein3e-34146
NC_008340:2034810:2053054205305420543431290Alkalilimnicola ehrlichei MLHE-1, complete genomeputative transposase3e-33143
NC_009786:43331:546075460755352746Escherichia coli E24377A plasmid pETEC_80, complete sequence3e-32139
NC_009786:43331:579845798458729746Escherichia coli E24377A plasmid pETEC_80, complete sequence3e-32139
NC_009483:3331500:3331529333152933327041176Geobacter uraniireducens Rf4 chromosome, complete genomeputative transposase3e-30133
NC_020291:2291418:2312284231228423134441161Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative transposase3e-29129
NC_015914:4248000:4261796426179642629681173Cyclobacterium marinum DSM 745 chromosome, complete genometransposase4e-29129
NC_015914:4248000:4256781425678142579531173Cyclobacterium marinum DSM 745 chromosome, complete genometransposase4e-29129
NC_014098:2809689:2814351281435128154781128Bacillus tusciae DSM 2912 chromosome, complete genomeputative transposase7e-29128
NC_014098:1670327:1687221168722116883481128Bacillus tusciae DSM 2912 chromosome, complete genomeputative transposase7e-29128
NC_012586:897148:9016139016139027911179Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceputative transposase number 2 for insertion sequence NGRIS-16c4e-27122
NC_017319:192482:211310211310211573264Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS1294 transposase1e-26120
NC_016048:2907702:2987542298754229886361095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-26119
NC_016048:987699:9961059961059971991095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-26119
NC_016048:797762:8025328025328036261095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-26119
NC_007626:959684:9953579953579965291173Magnetospirillum magneticum AMB-1, complete genomePutative transposase Y4QJ2e-25117
NC_021184:3497000:3498189349818934993341146Desulfotomaculum gibsoniae DSM 7213, complete genomePutative transposase2e-25116
NC_009997:2069894:2071438207143820725561119Shewanella baltica OS195, complete genomeputative transposase9e-23108
NC_016901:2070121:2072025207202520731431119Shewanella baltica OS678 chromosome, complete genometransposase9e-23108
NC_015675:2839000:2857550285755028587431194Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative transposase9e-23108
NC_018645:2390032:2402814240281424038991086Desulfobacula toluolica Tol2, complete genometransposase, IS801/IS1294 family8e-23108
NC_018645:2390032:2390032239003223911171086Desulfobacula toluolica Tol2, complete genometransposase, IS801/IS1294 family8e-23108
NC_010625:1602191:1606485160648516077051221Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceputative transposase7e-23108
NC_009790:42112:649406494065209270Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS1294, transposase, truncation5e-23108
NC_015703:5865921:5882682588268258850812400Runella slithyformis DSM 19594 chromosome, complete genome1e-22107
NC_013062:1298500:1301324130132413024301107Flavobacteriaceae bacterium 3519-10, complete genometransposase3e-22106
NC_018721:2872780:2875568287556828767131146Psychroflexus torquis ATCC 700755 chromosome, complete genometransposase, IS91 family1e-21104
NC_019973:2744000:2762603276260327636971095Mesorhizobium australicum WSM2073, complete genomePutative transposase1e-21104
NC_014923:2672000:2690550269055026916441095Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completetransposase1e-21104
NC_019902:2943719:2958875295887529600081134Thioalkalivibrio nitratireducens DSM 14787, complete genometransposase, IS91 family, putative6e-21102
NC_015572:2713599:2720014272001427211261113Methylomonas methanica MC09 chromosome, complete genometransposase9e-21101
NC_015186:2197236:2255598225559822567911194Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element2e-20100
NC_014836:2620871:2629601262960126307101110Desulfurispirillum indicum S5 chromosome, complete genometransposase for insertion sequence 801 (transposase 32 family protein)2e-20100
NC_009483:3644677:3678183367818336792801098Geobacter uraniireducens Rf4 chromosome, complete genomeputative transposase4e-2099.4
NC_019902:1681320:1693466169346616945991134Thioalkalivibrio nitratireducens DSM 14787, complete genometransposase, IS91 family, putative4e-1996.3
NC_016048:2907702:299990729999073000872966Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase9e-1995.1
NC_012108:2220983:222098322209832221915933Desulfobacterium autotrophicum HRM2, complete genometransposase for insertion sequence 801 (transposase 32 family protein)2e-1894
NC_012108:4971086:499654649965464997478933Desulfobacterium autotrophicum HRM2, complete genometransposase for insertion sequence 801 (transposase 32 family protein)2e-1894
NC_012791:4736084:4752157475215747533531197Variovorax paradoxus S110 chromosome 1, complete genomeputative transposase3e-1893.2
NC_020908:4263552:426776842677684268616849Octadecabacter arcticus 238, complete genomeIS91 family transposase2e-1790.5
NC_010681:1202929:1217523121752312186921170Burkholderia phytofirmans PsJN chromosome 1, complete sequenceputative transposase2e-1790.5
NC_009483:3331500:333406533340653334634570Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein4e-1789.7
NC_013194:2020134:2034160203416020352661107Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeputative transposase3e-1789.7
NC_020911:83717:837178371784598882Octadecabacter antarcticus 307, complete genomeIS91-family transposase2e-1687
NC_010660:175200:203362203362203484123Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencetransposase7e-1685.5
NC_011894:957897:9626549626549638621209Methylobacterium nodulans ORS 2060, complete genomeputative transposase2e-1584
NC_015675:2839000:285385628538562854743888Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative transposase5e-1582.4
NC_019973:2744000:275890927589092759796888Mesorhizobium australicum WSM2073, complete genome5e-1582.4
NC_014923:2672000:268685626868562687743888Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete5e-1582.4
NC_020908:2466446:248083424808342481604771Octadecabacter arcticus 238, complete genomeIS91 family transposase7e-1478.6
NC_009997:2635025:2661984266198426630691086Shewanella baltica OS195, complete genometransposase4e-1376.3
NC_016901:2594942:2621901262190126229861086Shewanella baltica OS678 chromosome, complete genometransposase4e-1376.3
NC_016048:2907702:300742030074203007950531Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase2e-1273.9
NC_016048:308342:335072335072335743672Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase3e-1169.7
NC_013194:761166:774114774114775037924Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeputative transposase2e-1067
NC_012108:2874831:290174329017432902423681Desulfobacterium autotrophicum HRM2, complete genometransposase (IS801 family protein)3e-1067
NC_011753:1680738:169142916914291692160732Vibrio splendidus LGP32 chromosome 1, complete genomePartial transposase ; IS91 family6e-1065.5
NC_016626:1825845:186187418618741862758885Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative transposase6e-0962.4
NC_016812:258500:287958287958288617660Sinorhizobium fredii HH103, complete genomeputative transposase y4qJ1e-0758.2
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase1e-0654.7
NC_016812:258500:287455287455287919465Sinorhizobium fredii HH103, complete genomeputative transposase y4qJ2e-0654.3